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H3-7
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  • H3-7
BRAIN BASAL GANGLIA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Basal ganglia
BASAL GANGLIA - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: High
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:17.2 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA042570
Glial cells High
Neuronal cells High



BASAL GANGLIA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

17.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 12.6
1781 Male, age 74, unknown 15.2
2289 Male, age 61, right hemisphere 14.3
2288 Male, age 75, left hemisphere 13.1
1857 Female, age 85, left hemisphere 11.9
2481 Female, age 94, left hemisphere 11.8
1854 Male, age 80, left hemisphere 11.6
2290 Female, age 72, unknown 11.5
2846 Female, age 79, unknown 11.1
Globus pallidus, externus
nTPM: 17.2
2395 Male, age 75, both hemispheres 19.8
1996 Male, age 80, right hemisphere 17.6
2772 Female, age 79, unknown 17.4
2646 Male, age 61, right hemisphere 16.1
2567 Female, age 72, unknown 14.8
Globus pallidus, internus
nTPM: 15.5
2566 Female, age 72, unknown 18.9
1818 Male, age 74, unknown 17.6
2037 Male, age 80, right hemisphere 15.3
2778 Female, age 91, both hemispheres 14.9
2483 Female, age 94, right hemisphere 14.7
2111 Female, age 85, right hemisphere 14.0
2287 Male, age 75, right hemisphere 13.3
Nucleus accumbens
nTPM: 13.2
2824 Male, age 61, right hemisphere 14.4
2732 Male, age 80, right hemisphere 14.2
2698 Female, age 72, unknown 13.7
2286 Male, age 75, left hemisphere 13.4
1856 Female, age 91, right hemisphere 13.0
2391 Female, age 94, left hemisphere 13.0
1783 Male, age 74, unknown 12.0
1806 Female, age 85, left hemisphere 12.0
Nucleus basalis of Meynert
nTPM: 14.3
2393 Male, age 80, right hemisphere 16.1
2569 Male, age 61, both hemispheres 15.2
2821 Male, age 75, both hemispheres 13.3
2484 Female, age 94, left hemisphere 12.7
Nucleus of the diagonal band
nTPM: 14.2
1979 Male, age 74, unknown 20.3
2775 Male, age 80, right hemisphere 15.5
1812 Female, age 91, both hemispheres 12.8
2195 Female, age 85, both hemispheres 11.8
2029 Male, age 61, right hemisphere 10.4
Putamen
nTPM: 12.0
2482 Female, age 94, left hemisphere 14.4
2647 Male, age 75, left hemisphere 13.8
1937 Female, age 91, right hemisphere 12.5
2466 Female, age 79, unknown 12.1
1838 Male, age 80, right hemisphere 11.5
2489 Female, age 72, unknown 10.2
1829 Male, age 74, unknown 9.5
Septal nuclei
nTPM: 14.7
2199 Male, age 80, right hemisphere 19.9
2394 Male, age 61, left hemisphere 17.9
2059 Female, age 85, both hemispheres 13.6
2009 Female, age 91, both hemispheres 13.4
2629 Female, age 94, right hemisphere 13.3
1960 Male, age 74, unknown 12.6
2031 Female, age 72, unknown 12.4
Stria terminalis, bed nucleus
nTPM: 16.6
2201 Male, age 74, unknown 22.6
1974 Female, age 91, both hemispheres 14.0
2486 Female, age 94, both hemispheres 13.4

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