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RAB7B
HPA
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  • RAB7B
PROTEIN SUMMARY GENE INFORMATION RNA DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

RAB7B
Synonyms MGC16212, MGC9726
Gene descriptioni

Full gene name according to HGNC.

RAB7B, member RAS oncogene family
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 1
Cytoband q32.1
Chromosome location (bp) 205976740 - 206003461
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

4
Ensembl ENSG00000276600 (version 109)
Entrez gene 338382
HGNC HGNC:30513
UniProt Q96AH8 (UniProt - Evidence at protein level)
neXtProt NX_Q96AH8
GeneCards RAB7B
Antibodypedia RAB7B antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Controls vesicular trafficking from endosomes to the trans-Golgi network (TGN). Acts as a negative regulator of TLR9 signaling and can suppress TLR9-triggered TNFA, IL6, and IFNB production in macrophages by promoting TLR9 lysosomal degradation. Also negatively regulates TLR4 signaling in macrophages by promoting lysosomal degradation of TLR4. Promotes megakaryocytic differentiation by increasing NF-kappa-B-dependent IL6 production and subsequently enhancing the association of STAT3 with GATA1. Not involved in the regulation of the EGF- and EGFR degradation pathway.... show less
Biological process (UniProt)i

Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

Protein transport, Transport
Ligand (UniProt)i

Keywords assigned by UniProt to proteins because they bind, are associated with, or whose activity is dependent of some molecule.

GTP-binding, Nucleotide-binding
Gene summary (Entrez)i

Useful information about the gene from Entrez

Predicted to enable GTP binding activity and GTPase activity. Involved in late endosome to Golgi transport; positive regulation of megakaryocyte differentiation; and regulation of gene expression. Located in cytoplasmic vesicle; lysosome; and trans-Golgi network. [provided by Alliance of Genome Resources, Apr 2022]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
RAB7B-201
ENSP00000482499
ENST00000617070
Q96AH8
[Direct mapping] Ras-related protein Rab-7b
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Show all
GO:0000166 [nucleotide binding]
GO:0003924 [GTPase activity]
GO:0005515 [protein binding]
GO:0005525 [GTP binding]
GO:0005764 [lysosome]
GO:0005768 [endosome]
GO:0005770 [late endosome]
GO:0005794 [Golgi apparatus]
GO:0005802 [trans-Golgi network]
GO:0008333 [endosome to lysosome transport]
GO:0015031 [protein transport]
GO:0016020 [membrane]
GO:0030670 [phagocytic vesicle membrane]
GO:0031410 [cytoplasmic vesicle]
GO:0031902 [late endosome membrane]
GO:0032755 [positive regulation of interleukin-6 production]
GO:0034144 [negative regulation of toll-like receptor 4 signaling pathway]
GO:0034164 [negative regulation of toll-like receptor 9 signaling pathway]
GO:0034499 [late endosome to Golgi transport]
GO:0045335 [phagocytic vesicle]
GO:0045654 [positive regulation of megakaryocyte differentiation]
GO:0051092 [positive regulation of NF-kappaB transcription factor activity]
GO:0071346 [cellular response to interferon-gamma]
GO:0090385 [phagosome-lysosome fusion]
Show all
199 aa
22.5 kDa
No 0
RAB7B-202
ENSP00000479762
ENST00000617991
Q96AH8
[Direct mapping] Ras-related protein Rab-7b
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Show all
GO:0000166 [nucleotide binding]
GO:0003924 [GTPase activity]
GO:0005515 [protein binding]
GO:0005525 [GTP binding]
GO:0005764 [lysosome]
GO:0005768 [endosome]
GO:0005770 [late endosome]
GO:0005794 [Golgi apparatus]
GO:0005802 [trans-Golgi network]
GO:0008333 [endosome to lysosome transport]
GO:0015031 [protein transport]
GO:0016020 [membrane]
GO:0030670 [phagocytic vesicle membrane]
GO:0031410 [cytoplasmic vesicle]
GO:0031902 [late endosome membrane]
GO:0032755 [positive regulation of interleukin-6 production]
GO:0034144 [negative regulation of toll-like receptor 4 signaling pathway]
GO:0034164 [negative regulation of toll-like receptor 9 signaling pathway]
GO:0034499 [late endosome to Golgi transport]
GO:0045335 [phagocytic vesicle]
GO:0045654 [positive regulation of megakaryocyte differentiation]
GO:0051092 [positive regulation of NF-kappaB transcription factor activity]
GO:0090385 [phagosome-lysosome fusion]
Show all
199 aa
22.5 kDa
No 0
RAB7B-203
ENSP00000485563
ENST00000622969
A0A096LPF0
[Direct mapping] Ras-related protein Rab-7b
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Show all
GO:0003924 [GTPase activity]
GO:0005525 [GTP binding]
Show all
91 aa
10.3 kDa
No 0
RAB7B-205
ENSP00000485386
ENST00000623893
A0A096LP44
[Direct mapping] Ras-related protein Rab-7b
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Show all
GO:0003924 [GTPase activity]
GO:0005525 [GTP binding]
Show all
157 aa
17.7 kDa
No 0

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