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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:325.9 nTPM
FANTOM5:261.6 Scaled Tags Per Million

THALAMUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

325.9
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 176.6
2497 Male, age 66, unknown 201.4
2032 Female, age 42, unknown 164.4
2396 Male, age 61, right hemisphere 164.0
Centromedial thalamic nucleus
nTPM: 186.6
2279 Female, age 85, left hemisphere 215.3
2401 Male, age 76, right hemisphere 158.0
Habenula
nTPM: 276.6
1957 Male, age 80, both hemispheres 380.5
2203 Male, age 61, left hemisphere 337.7
2252 Male, age 62, unknown 201.6
2276 Male, age 66, unknown 186.7
Lateral geniculate body
nTPM: 231.0
2106 Female, age 67, right hemisphere 329.8
1953 Male, age 62, unknown 301.5
2575 Female, age 94, right hemisphere 251.0
2857 Male, age 74, right hemisphere 223.8
2659 Male, age 66, unknown 203.7
2841 Male, age 80, both hemispheres 201.6
2035 Female, age 72, unknown 172.1
2399 Male, age 61, left hemisphere 164.5
Lateral thalamic nuclei
nTPM: 242.2
2765 Female, age 67, both hemispheres 380.0
1903 Male, age 76, left hemisphere 221.0
2573 Female, age 94, left hemisphere 219.7
2661 Female, age 72, unknown 204.6
2577 Male, age 74, both hemispheres 185.6
Medial dorsal thalamic nucleus
nTPM: 260.4
2492 Male, age 75, right hemisphere 301.2
2402 Female, age 67, both hemispheres 300.5
1930 Female, age 42, unknown 297.1
1971 Male, age 61, right hemisphere 296.6
1810 Male, age 48, unknown 284.2
2498 Male, age 66, unknown 264.4
2283 Male, age 80, right hemisphere 256.5
2572 Female, age 94, right hemisphere 255.9
2039 Female, age 72, unknown 248.2
1859 Male, age 76, both hemispheres 247.6
2026 Male, age 62, unknown 237.2
2660 Female, age 72, unknown 199.1
2576 Male, age 74, both hemispheres 196.3
Medial geniculate body
nTPM: 269.4
1811 Female, age 42, unknown 330.2
2049 Male, age 76, both hemispheres 322.9
2657 Male, age 74, right hemisphere 277.0
2571 Male, age 75, right hemisphere 256.1
2217 Female, age 72, unknown 239.0
2650 Female, age 94, left hemisphere 233.2
2207 Male, age 80, right hemisphere 227.2
Nucleus reuniens
nTPM: 325.9
2212 Female, age 67, left hemisphere 456.4
2205 Male, age 80, left hemisphere 262.8
2210 Female, age 85, left hemisphere 258.7
Nucleus rhomboideus
nTPM: 285.5
2213 Female, age 67, left hemisphere 381.8
2206 Male, age 80, both hemispheres 274.7
2280 Female, age 85, left hemisphere 200.0
Posterior thalamic nucleus
nTPM: 275.0
2495 Female, age 67, right hemisphere 387.7
2649 Female, age 94, both hemispheres 303.9
2266 Male, age 76, right hemisphere 221.3
2655 Male, age 74, right hemisphere 187.0
Pulvinar
nTPM: 247.0
2496 Female, age 67, right hemisphere 342.7
1972 Male, age 62, unknown 308.3
2214 Male, age 76, right hemisphere 295.4
1929 Male, age 48, unknown 274.4
2499 Male, age 66, unknown 261.4
2582 Female, age 72, unknown 239.7
2724 Male, age 74, right hemisphere 223.2
1899 Female, age 42, unknown 183.6
1932 Male, age 80, right hemisphere 182.9
2398 Male, age 61, left hemisphere 158.5
Subthalamic nucleus
nTPM: 266.5
2124 Male, age 62, unknown 360.8
2779 Female, age 42, unknown 280.4
2658 Male, age 74, both hemispheres 270.5
2056 Female, age 72, unknown 253.7
2406 Female, age 72, unknown 253.5
2282 Male, age 61, both hemispheres 249.0
2216 Male, age 48, unknown 237.1
2275 Male, age 66, unknown 227.0
Ventral posterolateral thalamic nucleus
nTPM: 211.4
2197 Male, age 80, both hemispheres 300.7
2570 Male, age 75, right hemisphere 290.8
2740 Male, age 76, right hemisphere 216.6
2578 Male, age 74, both hemispheres 202.9
2397 Male, age 61, right hemisphere 139.9
2581 Female, age 72, unknown 117.5
Ventral posteromedial thalamic nucleus
nTPM: 248.2
2281 Male, age 75, right hemisphere 300.8
2202 Male, age 61, left hemisphere 271.1
2758 Male, age 80, both hemispheres 243.3
2127 Male, age 76, right hemisphere 233.3
2653 Male, age 74, both hemispheres 192.6
Ventral thalamic nuclei
nTPM: 237.2
1912 Female, age 42, unknown 310.8
2285 Male, age 62, unknown 305.4
2291 Female, age 72, unknown 260.3
2580 Male, age 66, unknown 240.0
1860 Male, age 76, both hemispheres 232.4
2652 Male, age 74, left hemisphere 212.5
1845 Male, age 48, unknown 206.1
2204 Male, age 80, both hemispheres 198.1
2858 Female, age 72, unknown 169.5
Zona incerta
nTPM: 244.4
2822 Male, age 74, right hemisphere 290.9
2215 Male, age 66, unknown 278.9
2403 Male, age 62, unknown 255.1
2208 Male, age 80, right hemisphere 237.7
2663 Female, age 72, unknown 159.2

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

261.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 261.6
FF:10154-103A1 76 years, female 261.6

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