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SCO2
HPA
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  • SCO2
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

SCO2
Synonyms MYP6, SCO1L
Gene descriptioni

Full gene name according to HGNC.

Synthesis of cytochrome C oxidase 2
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Disease related genes
Human disease related genes
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Membrane
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 22
Cytoband q13.33
Chromosome location (bp) 50523568 - 50526461
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

5
Ensembl ENSG00000284194 (version 109)
Entrez gene 9997
HGNC HGNC:10604
UniProt O43819 (UniProt - Evidence at protein level)
neXtProt NX_O43819
GeneCards SCO2
Antibodypedia SCO2 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Copper metallochaperone essential for the synthesis and maturation of cytochrome c oxidase subunit II (MT-CO2/COX2). Involved in transporting copper to the Cu(A) site on MT-CO2/COX2 1, 2. Also acts as a thiol-disulfide oxidoreductase to regulate the redox state of the cysteines in SCO1 during maturation of MT-CO2/COX2 3.... show less
Molecular function (UniProt)i

Keywords assigned by UniProt to proteins due to their particular molecular function.

Chaperone
Ligand (UniProt)i

Keywords assigned by UniProt to proteins because they bind, are associated with, or whose activity is dependent of some molecule.

Copper, Metal-binding
Gene summary (Entrez)i

Useful information about the gene from Entrez

Cytochrome c oxidase (COX) catalyzes the transfer of electrons from cytochrome c to molecular oxygen, which helps to maintain the proton gradient across the inner mitochondrial membrane that is necessary for aerobic ATP production. Human COX is a multimeric protein complex that requires several assembly factors; this gene encodes one of the COX assembly factors. The encoded protein is a metallochaperone that is involved in the biogenesis of cytochrome c oxidase subunit II. Mutations in this gene are associated with fatal infantile encephalocardiomyopathy and myopia 6. [provided by RefSeq, Oct 2014]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
SCO2-201
ENSP00000252785
ENST00000252785
O43819
[Direct mapping] Protein SCO2 homolog, mitochondrial
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Disease related genes
Human disease related genes
   Congenital disorders of metabolism
   Mitochondrial diseases
   Nervous system diseases
   Eye disease
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0001654 [eye development]
GO:0005507 [copper ion binding]
GO:0005515 [protein binding]
GO:0005739 [mitochondrion]
GO:0005743 [mitochondrial inner membrane]
GO:0005759 [mitochondrial matrix]
GO:0006878 [cellular copper ion homeostasis]
GO:0008535 [respiratory chain complex IV assembly]
GO:0015035 [protein-disulfide reductase activity]
GO:0016020 [membrane]
GO:0016531 [copper chaperone activity]
GO:0030016 [myofibril]
GO:0033617 [mitochondrial cytochrome c oxidase assembly]
GO:0046872 [metal ion binding]
Show all
266 aa
29.8 kDa
No 1
SCO2-202
ENSP00000379046
ENST00000395693
O43819
[Direct mapping] Protein SCO2 homolog, mitochondrial
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Disease related genes
Human disease related genes
   Congenital disorders of metabolism
   Mitochondrial diseases
   Nervous system diseases
   Eye disease
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0001654 [eye development]
GO:0001701 [in utero embryonic development]
GO:0003012 [muscle system process]
GO:0005507 [copper ion binding]
GO:0005515 [protein binding]
GO:0005739 [mitochondrion]
GO:0005743 [mitochondrial inner membrane]
GO:0005759 [mitochondrial matrix]
GO:0006878 [cellular copper ion homeostasis]
GO:0008535 [respiratory chain complex IV assembly]
GO:0014823 [response to activity]
GO:0015035 [protein-disulfide reductase activity]
GO:0016020 [membrane]
GO:0016531 [copper chaperone activity]
GO:0022904 [respiratory electron transport chain]
GO:0030016 [myofibril]
GO:0033617 [mitochondrial cytochrome c oxidase assembly]
GO:0046872 [metal ion binding]
GO:0055070 [copper ion homeostasis]
Show all
266 aa
29.8 kDa
No 1
SCO2-203
ENSP00000444242
ENST00000535425
O43819
[Direct mapping] Protein SCO2 homolog, mitochondrial
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Disease related genes
Human disease related genes
   Congenital disorders of metabolism
   Mitochondrial diseases
   Nervous system diseases
   Eye disease
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0001654 [eye development]
GO:0005507 [copper ion binding]
GO:0005515 [protein binding]
GO:0005739 [mitochondrion]
GO:0005743 [mitochondrial inner membrane]
GO:0005759 [mitochondrial matrix]
GO:0006878 [cellular copper ion homeostasis]
GO:0008535 [respiratory chain complex IV assembly]
GO:0015035 [protein-disulfide reductase activity]
GO:0016020 [membrane]
GO:0016531 [copper chaperone activity]
GO:0030016 [myofibril]
GO:0033617 [mitochondrial cytochrome c oxidase assembly]
GO:0046872 [metal ion binding]
Show all
266 aa
29.8 kDa
No 1
SCO2-204
ENSP00000444433
ENST00000543927
O43819
[Direct mapping] Protein SCO2 homolog, mitochondrial
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Disease related genes
Human disease related genes
   Congenital disorders of metabolism
   Mitochondrial diseases
   Nervous system diseases
   Eye disease
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0001654 [eye development]
GO:0005507 [copper ion binding]
GO:0005515 [protein binding]
GO:0005739 [mitochondrion]
GO:0005743 [mitochondrial inner membrane]
GO:0005759 [mitochondrial matrix]
GO:0006878 [cellular copper ion homeostasis]
GO:0008535 [respiratory chain complex IV assembly]
GO:0015035 [protein-disulfide reductase activity]
GO:0016020 [membrane]
GO:0016531 [copper chaperone activity]
GO:0030016 [myofibril]
GO:0033617 [mitochondrial cytochrome c oxidase assembly]
GO:0046872 [metal ion binding]
Show all
266 aa
29.8 kDa
No 1
SCO2-205
ENSP00000491753
ENST00000638598
A0A1W2PQK0
[Direct mapping] Protein SCO2 homolog, mitochondrial
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Human disease related genes
   Congenital disorders of metabolism
   Mitochondrial diseases
   Nervous system diseases
   Eye disease
Show all
GO:0005739 [mitochondrion]
GO:0005829 [cytosol]
Show all
168 aa
18.6 kDa
No 1

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