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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
47.4
nTPM
FANTOM5:
680.1
Scaled Tags Per Million
BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis
BASAL GANGLIA - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
47.4
Sample id
Sample description
nTPM
Caudate nucleus nTPM: 22.2
2288
Male, age 75, left hemisphere
31.5
1781
Male, age 74, unknown
24.9
2846
Female, age 79, unknown
23.4
2290
Female, age 72, unknown
22.9
1854
Male, age 80, left hemisphere
21.4
2481
Female, age 94, left hemisphere
20.8
2289
Male, age 61, right hemisphere
17.1
1857
Female, age 85, left hemisphere
15.8
Globus pallidus, externus nTPM: 42.0
1996
Male, age 80, right hemisphere
50.7
2646
Male, age 61, right hemisphere
44.1
2772
Female, age 79, unknown
41.0
2567
Female, age 72, unknown
37.3
2395
Male, age 75, both hemispheres
37.0
Globus pallidus, internus nTPM: 47.4
2111
Female, age 85, right hemisphere
66.0
2778
Female, age 91, both hemispheres
60.1
2287
Male, age 75, right hemisphere
55.0
2037
Male, age 80, right hemisphere
49.0
2566
Female, age 72, unknown
36.3
1818
Male, age 74, unknown
35.1
2483
Female, age 94, right hemisphere
30.2
Nucleus accumbens nTPM: 27.8
2391
Female, age 94, left hemisphere
42.6
2732
Male, age 80, right hemisphere
37.2
2286
Male, age 75, left hemisphere
28.1
1806
Female, age 85, left hemisphere
25.5
2698
Female, age 72, unknown
25.5
1783
Male, age 74, unknown
24.9
2824
Male, age 61, right hemisphere
22.5
1856
Female, age 91, right hemisphere
16.2
Nucleus basalis of Meynert nTPM: 29.2
2569
Male, age 61, both hemispheres
33.3
2821
Male, age 75, both hemispheres
29.8
2484
Female, age 94, left hemisphere
27.8
2393
Male, age 80, right hemisphere
26.0
Nucleus of the diagonal band nTPM: 15.7
1812
Female, age 91, both hemispheres
19.8
1979
Male, age 74, unknown
17.7
2029
Male, age 61, right hemisphere
15.0
2195
Female, age 85, both hemispheres
14.3
2775
Male, age 80, right hemisphere
11.6
Putamen nTPM: 25.1
2466
Female, age 79, unknown
29.6
1829
Male, age 74, unknown
29.4
1937
Female, age 91, right hemisphere
29.1
2489
Female, age 72, unknown
25.4
2482
Female, age 94, left hemisphere
25.0
2647
Male, age 75, left hemisphere
23.0
1838
Male, age 80, right hemisphere
13.9
Septal nuclei nTPM: 22.0
2394
Male, age 61, left hemisphere
34.4
2059
Female, age 85, both hemispheres
23.0
2199
Male, age 80, right hemisphere
22.2
2629
Female, age 94, right hemisphere
20.3
2009
Female, age 91, both hemispheres
20.1
2031
Female, age 72, unknown
19.7
1960
Male, age 74, unknown
14.0
Stria terminalis, bed nucleus nTPM: 22.0
1974
Female, age 91, both hemispheres
24.1
2201
Male, age 74, unknown
22.6
2486
Female, age 94, both hemispheres
19.3
BASAL GANGLIA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
The Human Protein Atlas project is funded
