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NOTCH2NLC
HPA
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  • NOTCH2NLC
PROTEIN SUMMARY GENE INFORMATION RNA DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

NOTCH2NLC
Synonyms
Gene descriptioni

Full gene name according to HGNC.

Notch 2 N-terminal like C
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Disease related genes
Human disease related genes
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Secreted, Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 1
Cytoband q21.2
Chromosome location (bp) 149390621 - 149471833
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

3
Ensembl ENSG00000286219 (version 109)
Entrez gene 100996717
HGNC HGNC:53924
UniProt P0DPK4 (UniProt - Evidence at protein level)
neXtProt NX_P0DPK4
GeneCards NOTCH2NLC
Antibodypedia NOTCH2NLC antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Human-specific protein that promotes neural progenitor proliferation and evolutionary expansion of the brain neocortex by regulating the Notch signaling pathway 1, 2, 3. Able to promote neural progenitor self-renewal, possibly by down-regulating neuronal differentiation genes, thereby delaying the differentiation of neuronal progenitors and leading to an overall final increase in neuronal production 4. Acts by enhancing the Notch signaling pathway via two different mechanisms that probably work in parallel to reach the same effect 5. Enhances Notch signaling pathway in a non-cell-autonomous manner via direct interaction with NOTCH2 6. Also promotes Notch signaling pathway in a cell-autonomous manner through inhibition of cis DLL1-NOTCH2 interactions, which promotes neuronal differentiation (By similarity).... show less
Biological process (UniProt)i

Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

Notch signaling pathway
Ligand (UniProt)i

Keywords assigned by UniProt to proteins because they bind, are associated with, or whose activity is dependent of some molecule.

Calcium
Gene summary (Entrez)i

Useful information about the gene from Entrez

Predicted to enable calcium ion binding activity. Involved in cerebral cortex development and positive regulation of Notch signaling pathway. Located in extracellular region. Implicated in essential tremor. [provided by Alliance of Genome Resources, Apr 2022]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
NOTCH2NLC-201
ENSP00000462298
ENST00000578189
P0DPK4
[Direct mapping] Notch homolog 2 N-terminal-like protein C
Show all
Predicted secreted proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Disease related genes
Human disease related genes
   Musculoskeletal diseases
   Muscular diseases
   Nervous system diseases
   Other nervous and sensory system diseases
Mapped to neXtProt
   neXtProt - Evidence at protein level
Show all
GO:0005509 [calcium ion binding]
GO:0005515 [protein binding]
GO:0005576 [extracellular region]
GO:0007219 [Notch signaling pathway]
GO:0021987 [cerebral cortex development]
GO:0045747 [positive regulation of Notch signaling pathway]
Show all
236 aa
25.8 kDa
No 0
NOTCH2NLC-202
ENSP00000499085
ENST00000650865
Predicted secreted proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Musculoskeletal diseases
   Muscular diseases
   Nervous system diseases
   Other nervous and sensory system diseases
Show all
GO:0005509 [calcium ion binding]
Show all
293 aa
31.5 kDa
No 0
NOTCH2NLC-203
ENSP00000498514
ENST00000652191
P0DPK4
[Direct mapping] Notch homolog 2 N-terminal-like protein C
Show all
Predicted secreted proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Disease related genes
Human disease related genes
   Musculoskeletal diseases
   Muscular diseases
   Nervous system diseases
   Other nervous and sensory system diseases
Mapped to neXtProt
   neXtProt - Evidence at protein level
Show all
GO:0005509 [calcium ion binding]
GO:0005515 [protein binding]
GO:0005576 [extracellular region]
GO:0007219 [Notch signaling pathway]
GO:0021987 [cerebral cortex development]
GO:0045747 [positive regulation of Notch signaling pathway]
Show all
236 aa
25.8 kDa
No 0

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