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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
66.7
nTPM
FANTOM5:
185.6
Scaled Tags Per Million
MIDBRAIN - Annotated protein expression
Pending normal tissue analysis
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
66.7
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 53.3
2586
Male, age 75, left hemisphere
100.6
2219
Male, age 76, both hemispheres
59.9
1830
Male, age 51, unknown
57.9
2828
Female, age 72, unknown
56.9
1827
Male, age 72, unknown
54.3
1833
Male, age 53, unknown
52.5
2411
Female, age 72, unknown
44.3
2019
Male, age 18, unknown
38.8
2666
Male, age 74, left hemisphere
37.2
1870
Female, age 42, unknown
30.2
Dorsal raphe nucleus nTPM: 49.1
2047
Male, age 72, unknown
66.8
2750
Male, age 76, both hemispheres
55.2
1828
Male, age 53, unknown
48.5
2298
Female, age 72, unknown
41.8
2016
Female, age 72, unknown
33.4
Inferior colliculus nTPM: 51.2
2849
Male, age 72, unknown
67.5
1890
Male, age 53, unknown
53.0
2097
Female, age 72, unknown
42.4
1848
Female, age 42, unknown
41.7
Median raphe nucleus nTPM: 66.7
2220
Male, age 76, midline
66.7
Periaquaductal grey, anterior nTPM: 57.3
1795
Male, age 51, unknown
68.4
2502
Female, age 75, unknown
58.3
1947
Male, age 18, unknown
45.2
Periaquaductal grey, dorsal nTPM: 37.3
1831
Male, age 72, unknown
56.5
2464
Female, age 72, unknown
42.0
2850
Male, age 76, both hemispheres
33.7
1840
Male, age 53, unknown
17.1
Periaquaductal grey, lateral nTPM: 51.1
2053
Male, age 18, unknown
55.5
2272
Male, age 74, both hemispheres
50.8
2140
Male, age 76, both hemispheres
46.9
Pretectal area nTPM: 40.4
2007
Male, age 72, unknown
74.2
2407
Male, age 75, both hemispheres
53.7
2224
Female, age 72, unknown
50.8
2825
Male, age 18, unknown
45.6
1944
Female, age 72, unknown
35.7
2667
Female, age 75, unknown
35.7
2273
Male, age 74, both hemispheres
33.6
2316
Male, age 76, right hemisphere
32.6
1817
Female, age 42, unknown
30.5
1816
Male, age 51, unknown
29.2
1815
Male, age 53, unknown
23.4
Red nucleus nTPM: 50.6
2503
Female, age 72, unknown
72.6
2584
Male, age 75, left hemisphere
71.5
2588
Male, age 74, left hemisphere
64.5
1865
Male, age 51, unknown
59.8
2227
Male, age 72, unknown
58.4
2785
Male, age 18, unknown
52.9
2769
Male, age 72, unknown
49.9
1904
Male, age 53, unknown
48.1
1954
Female, age 42, unknown
43.4
2725
Female, age 75, unknown
38.5
2823
Male, age 76, right hemisphere
33.1
1821
Female, age 72, unknown
14.1
Substantia nigra nTPM: 42.5
2583
Male, age 75, right hemisphere
66.7
1916
Female, age 42, unknown
62.5
2665
Male, age 74, both hemispheres
61.5
1941
Male, age 53, unknown
57.0
1889
Female, age 72, unknown
47.1
2590
Female, age 75, unknown
43.9
2699
Male, age 18, unknown
33.0
1851
Male, age 51, unknown
30.3
2409
Female, age 72, unknown
21.2
2241
Male, age 72, unknown
1.3
Superior colliculus nTPM: 52.8
1995
Male, age 72, unknown
90.8
1796
Male, age 53, unknown
66.0
2664
Male, age 75, both hemispheres
58.7
2261
Male, age 18, unknown
56.4
1839
Male, age 51, unknown
48.6
2668
Female, age 75, unknown
48.2
1913
Female, age 42, unknown
45.3
2587
Male, age 74, left hemisphere
44.1
2087
Female, age 72, unknown
41.6
1895
Male, age 76, right hemisphere
28.7
Ventral tegmental area nTPM: 54.4
2223
Female, age 72, unknown
71.6
2021
Male, age 53, unknown
66.4
2218
Male, age 76, both hemispheres
61.8
1942
Male, age 51, unknown
44.4
2410
Female, age 72, unknown
44.4
1915
Female, age 42, unknown
38.1
MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
The Human Protein Atlas project is funded
