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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
190.2
nTPM
FANTOM5:
92.7
Scaled Tags Per Million
Pig:
84.7
nTPM
Mouse:
57.0
nTPM
Allen mouse:
5.8
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
190.2
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 190.2
2586
Male, age 75, left hemisphere
300.5
2666
Male, age 74, left hemisphere
227.7
1827
Male, age 72, unknown
215.8
2828
Female, age 72, unknown
193.4
2219
Male, age 76, both hemispheres
175.8
1830
Male, age 51, unknown
170.5
1833
Male, age 53, unknown
169.7
1870
Female, age 42, unknown
169.0
2019
Male, age 18, unknown
145.6
2411
Female, age 72, unknown
133.7
Dorsal raphe nucleus nTPM: 155.2
2047
Male, age 72, unknown
171.2
1828
Male, age 53, unknown
161.2
2750
Male, age 76, both hemispheres
156.2
2298
Female, age 72, unknown
146.9
2016
Female, age 72, unknown
140.8
Inferior colliculus nTPM: 175.2
2849
Male, age 72, unknown
212.2
1890
Male, age 53, unknown
170.9
1848
Female, age 42, unknown
163.7
2097
Female, age 72, unknown
153.8
Median raphe nucleus nTPM: 164.0
2220
Male, age 76, midline
164.0
Periaquaductal grey, anterior nTPM: 184.1
1947
Male, age 18, unknown
190.7
1795
Male, age 51, unknown
188.1
2502
Female, age 75, unknown
173.4
Periaquaductal grey, dorsal nTPM: 174.3
2850
Male, age 76, both hemispheres
188.2
1840
Male, age 53, unknown
185.5
1831
Male, age 72, unknown
182.4
2464
Female, age 72, unknown
140.9
Periaquaductal grey, lateral nTPM: 153.0
2140
Male, age 76, both hemispheres
169.4
2053
Male, age 18, unknown
163.2
2272
Male, age 74, both hemispheres
126.5
Pretectal area nTPM: 184.8
2407
Male, age 75, both hemispheres
238.9
1816
Male, age 51, unknown
231.2
1817
Female, age 42, unknown
197.3
1944
Female, age 72, unknown
196.5
1815
Male, age 53, unknown
190.5
2007
Male, age 72, unknown
190.4
2825
Male, age 18, unknown
187.6
2667
Female, age 75, unknown
179.0
2316
Male, age 76, right hemisphere
157.2
2224
Female, age 72, unknown
149.8
2273
Male, age 74, both hemispheres
114.9
Red nucleus nTPM: 164.2
2584
Male, age 75, left hemisphere
250.2
2588
Male, age 74, left hemisphere
190.6
2725
Female, age 75, unknown
171.5
2823
Male, age 76, right hemisphere
163.6
2785
Male, age 18, unknown
155.8
2769
Male, age 72, unknown
153.0
1954
Female, age 42, unknown
152.8
1904
Male, age 53, unknown
151.5
2227
Male, age 72, unknown
150.3
1821
Female, age 72, unknown
149.8
2503
Female, age 72, unknown
144.4
1865
Male, age 51, unknown
137.5
Substantia nigra nTPM: 168.6
2665
Male, age 74, both hemispheres
216.8
2583
Male, age 75, right hemisphere
198.9
1916
Female, age 42, unknown
187.4
2699
Male, age 18, unknown
179.4
1889
Female, age 72, unknown
178.8
2590
Female, age 75, unknown
166.9
1851
Male, age 51, unknown
164.2
1941
Male, age 53, unknown
164.0
2241
Male, age 72, unknown
126.5
2409
Female, age 72, unknown
102.9
Superior colliculus nTPM: 182.9
2664
Male, age 75, both hemispheres
258.0
2261
Male, age 18, unknown
191.8
2087
Female, age 72, unknown
187.7
2668
Female, age 75, unknown
182.5
1796
Male, age 53, unknown
181.5
1839
Male, age 51, unknown
180.0
1913
Female, age 42, unknown
167.9
1895
Male, age 76, right hemisphere
162.2
2587
Male, age 74, left hemisphere
161.7
1995
Male, age 72, unknown
155.7
Ventral tegmental area nTPM: 162.0
2223
Female, age 72, unknown
171.8
2218
Male, age 76, both hemispheres
171.0
1915
Female, age 42, unknown
168.3
2021
Male, age 53, unknown
165.1
1942
Male, age 51, unknown
160.9
2410
Female, age 72, unknown
135.1
MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
57.0
Mouse sample
Sample description
nTPM
Midbrain nTPM: 57.0
Samples: 4
Max nTPM: 63.4
Min nTPM: 49.2
Sample A
Male
49.2
Sample B
Male
56.3
Sample C
Female
59.1
Sample D
Female
63.4
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
