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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Medium
Neuronal cells:
Medium
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
237.9
nTPM
FANTOM5:
156.2
Scaled Tags Per Million
Pig:
94.6
nTPM
Mouse:
100.8
nTPM
Allen mouse:
8.5
Expression energy
CAUDATE - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA021022
Glial cells
Medium
Neuronal cells
Medium
BASAL GANGLIA - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
237.9
Sample id
Sample description
nTPM
Caudate nucleus nTPM: 173.5
1781
Male, age 74, unknown
202.7
1857
Female, age 85, left hemisphere
193.9
2290
Female, age 72, unknown
189.5
2846
Female, age 79, unknown
185.0
1854
Male, age 80, left hemisphere
175.4
2289
Male, age 61, right hemisphere
174.4
2481
Female, age 94, left hemisphere
134.3
2288
Male, age 75, left hemisphere
132.7
Globus pallidus, externus nTPM: 152.6
2567
Female, age 72, unknown
179.2
2646
Male, age 61, right hemisphere
168.2
2395
Male, age 75, both hemispheres
139.3
2772
Female, age 79, unknown
138.8
1996
Male, age 80, right hemisphere
137.6
Globus pallidus, internus nTPM: 139.8
2566
Female, age 72, unknown
181.2
1818
Male, age 74, unknown
154.5
2037
Male, age 80, right hemisphere
142.7
2287
Male, age 75, right hemisphere
126.8
2111
Female, age 85, right hemisphere
125.1
2483
Female, age 94, right hemisphere
124.1
2778
Female, age 91, both hemispheres
124.1
Nucleus accumbens nTPM: 175.5
1783
Male, age 74, unknown
215.6
2698
Female, age 72, unknown
211.1
1856
Female, age 91, right hemisphere
195.1
1806
Female, age 85, left hemisphere
181.9
2824
Male, age 61, right hemisphere
176.0
2732
Male, age 80, right hemisphere
153.8
2391
Female, age 94, left hemisphere
138.2
2286
Male, age 75, left hemisphere
132.1
Nucleus basalis of Meynert nTPM: 169.2
2569
Male, age 61, both hemispheres
187.2
2821
Male, age 75, both hemispheres
182.3
2393
Male, age 80, right hemisphere
160.5
2484
Female, age 94, left hemisphere
146.9
Nucleus of the diagonal band nTPM: 237.9
2195
Female, age 85, both hemispheres
263.2
1812
Female, age 91, both hemispheres
246.8
2029
Male, age 61, right hemisphere
239.6
2775
Male, age 80, right hemisphere
233.4
1979
Male, age 74, unknown
206.5
Putamen nTPM: 176.4
2647
Male, age 75, left hemisphere
210.5
1838
Male, age 80, right hemisphere
197.4
1829
Male, age 74, unknown
188.3
2489
Female, age 72, unknown
173.7
1937
Female, age 91, right hemisphere
167.7
2466
Female, age 79, unknown
157.5
2482
Female, age 94, left hemisphere
140.0
Septal nuclei nTPM: 224.3
1960
Male, age 74, unknown
274.3
2629
Female, age 94, right hemisphere
272.8
2059
Female, age 85, both hemispheres
235.5
2031
Female, age 72, unknown
230.7
2009
Female, age 91, both hemispheres
209.6
2394
Male, age 61, left hemisphere
173.7
2199
Male, age 80, right hemisphere
173.4
Stria terminalis, bed nucleus nTPM: 208.9
1974
Female, age 91, both hemispheres
221.9
2486
Female, age 94, both hemispheres
209.7
2201
Male, age 74, unknown
195.2
BASAL GANGLIA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
100.8
Mouse sample
Sample description
nTPM
Caudate putamen nTPM: 100.8
Samples: 4
Max nTPM: 104.6
Min nTPM: 94.0
Sample A
Male
100.5
Sample B
Male
104.6
Sample C
Female
94.0
Sample D
Female
104.0
Septum nTPM: 77.4
Samples: 4
Max nTPM: 93.0
Min nTPM: 65.7
Sample A
Male
93.0
Sample B
Male
65.7
Sample C
Female
67.0
Sample D
Female
83.7
Ventral forebrain nTPM: 94.0
Samples: 4
Max nTPM: 102.7
Min nTPM: 85.0
Sample A
Male
93.8
Sample B
Male
94.3
Sample C
Female
85.0
Sample D
Female
102.7
BASAL GANGLIA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
