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ENSG00000289694
HPA
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  • SUMMARY

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  • BRAIN

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  • ENSG00000289694
BRAIN CEREBRAL CORTEX Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Cerebral cortex
CEREBRAL CORTEX - Expression summary
Protein expression
Cerebral cortexi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Endothelial cells: Not detected
Glial cells: Not detected
Neuronal cells: Low
Neuropil: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:44.2 nTPM
HPA:44.2 nTPM
HPA Brain:19.4 nTPM
HPA PFC Brain:31.8 nTPM
FANTOM5:15.2 Scaled Tags Per Million

CEREBRAL CORTEX - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA069590
Endothelial cells Not detected
Glial cells Not detected
Neuronal cells Low
Neuropil Medium



CEREBRAL CORTEX - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

44.2
N/A
Male, age 5
Cerebral cortex sample 48
nTPM: 37.6
overview
Female, age 40
Cerebral cortex sample 105
nTPM: 35.1
Cell types%
Neuronal cells:
35

Glial cells and endothelial cells:
65

overview
Male, age 70
Cerebral cortex sample 106
nTPM: 60
Cell types%
Neuronal cells:
35

Glial cells and endothelial cells:
65


CEREBRAL CORTEX - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

19.4
Sample id Sample description nTPM
Angular gyrus
nTPM: 12.4
2103 Male, age 75, left hemisphere 20.3
1866 Male, age 76, both hemispheres 16.0
2260 Female, age 72, left hemisphere 13.1
1790 Male, age 76, right hemisphere 11.8
2221 Female, age 67, right hemisphere 10.9
2265 Female, age 91, left hemisphere 9.9
2602 Female, age 94, right hemisphere 9.8
2722 Male, age 61, left hemisphere 7.0
Anterior cingulate cortex, supragenual-dorsal
nTPM: 9.8
1896 Female, age 85, right hemisphere 14.6
2472 Male, age 75, left hemisphere 10.3
2547 Male, age 74, left hemisphere 10.0
2342 Female, age 94, right hemisphere 7.9
2478 Female, age 67, right hemisphere 6.0
Anterior cingulate cortex, supragenual-ventral
nTPM: 8.9
1950 Female, age 85, right hemisphere 12.0
2479 Female, age 67, right hemisphere 10.9
1755 Female, age 94, right hemisphere 8.0
2538 Male, age 75, left hemisphere 7.8
1761 Male, age 74, left hemisphere 6.0
Anterior insular cortex, dorsal
nTPM: 9.6
2235 Female, age 91, right hemisphere 11.3
2506 Female, age 94, right hemisphere 10.0
2670 Male, age 75, left hemisphere 9.2
2001 Male, age 76, right hemisphere 8.0
Anterior insular cortex, ventral
nTPM: 10.2
1925 Female, age 91, left hemisphere 14.9
2596 Male, age 75, left hemisphere 14.2
1852 Male, age 76, left hemisphere 10.2
2507 Female, age 94, left hemisphere 8.4
2262 Female, age 67, right hemisphere 7.4
2757 Male, age 61, right hemisphere 5.9
Area parastriata, inferior
nTPM: 14.5
2234 Male, age 75, left hemisphere 29.8
2509 Female, age 94, left hemisphere 24.6
1789 Male, age 76, right hemisphere 14.5
1758 Female, age 72, right hemisphere 9.0
1760 Female, age 67, left hemisphere 8.9
2421 Female, age 91, left hemisphere 7.6
2268 Male, age 61, right hemisphere 7.2
Area parastriata, parietal
nTPM: 13.1
2420 Male, age 75, left hemisphere 19.6
2233 Male, age 61, right hemisphere 13.8
2236 Female, age 91, left hemisphere 12.4
1785 Male, age 76, right hemisphere 11.5
2680 Female, age 94, right hemisphere 8.1
Area parastriata, superior
nTPM: 14.8
2604 Female, age 94, right hemisphere 23.8
2419 Male, age 75, right hemisphere 18.7
2684 Female, age 67, left hemisphere 15.4
1773 Female, age 91, left hemisphere 10.6
2435 Male, age 61, left hemisphere 10.1
2881 Male, age 76, left hemisphere 10.0
Area parastriata, temporal
nTPM: 11.2
2424 Female, age 67, left hemisphere 14.3
1804 Male, age 76, right hemisphere 13.0
2267 Male, age 61, right hemisphere 11.7
2471 Male, age 75, left hemisphere 10.6
2681 Female, age 94, right hemisphere 6.5
Area striata
nTPM: 11.9
2002 Female, age 91, right hemisphere 24.7
1884 Male, age 76, left hemisphere 24.1
2679 Female, age 94, right hemisphere 9.9
1753 Female, age 72, right hemisphere 6.9
2427 Female, age 91, left hemisphere 4.4
2417 Male, age 61, right hemisphere 1.3
Claustrum
nTPM: 12.5
1956 Male, age 74, unknown 22.9
2198 Male, age 80, both hemispheres 17.1
2292 Female, age 85, both hemispheres 15.7
2196 Female, age 79, unknown 13.5
2568 Male, age 61, both hemispheres 11.2
2392 Female, age 94, both hemispheres 11.1
2491 Male, age 75, both hemispheres 8.9
2284 Female, age 91, both hemispheres 6.8
2645 Female, age 72, unknown 5.5
Frontal eye field
nTPM: 10.3
2147 Male, age 61, left hemisphere 16.1
2761 Female, age 94, left hemisphere 11.2
2543 Male, age 74, left hemisphere 7.1
2441 Male, age 75, left hemisphere 6.9
Frontal operculum
nTPM: 13.2
2030 Male, age 61, right hemisphere 18.6
2348 Male, age 75, left hemisphere 16.1
2781 Female, age 85, right hemisphere 4.8
Fusiform gyrus
nTPM: 9.0
2074 Female, age 91, left hemisphere 13.9
1807 Male, age 76, left hemisphere 12.2
2112 Male, age 80, both hemispheres 9.9
2617 Female, age 94, left hemisphere 9.9
2431 Male, age 75, right hemisphere 7.6
2784 Female, age 85, left hemisphere 6.0
2433 Female, age 72, left hemisphere 3.6
Inferior frontal gyrus, opercular
nTPM: 12.8
2866 Male, age 61, right hemisphere 24.5
2874 Female, age 85, right hemisphere 21.4
2865 Male, age 61, left hemisphere 12.8
2871 Female, age 94, left hemisphere 12.2
2872 Female, age 94, right hemisphere 12.1
2868 Male, age 75, right hemisphere 11.5
2875 Female, age 67, left hemisphere 10.3
2873 Female, age 85, left hemisphere 8.9
2869 Male, age 74, left hemisphere 7.8
2867 Male, age 75, left hemisphere 6.8
Inferior parietal lobule
nTPM: 7.2
2599 Female, age 94, left hemisphere 8.7
2876 Male, age 76, right hemisphere 8.4
2606 Female, age 67, right hemisphere 8.1
2418 Male, age 75, left hemisphere 3.6
Inferior temporal gyrus
nTPM: 9.9
1808 Male, age 76, left hemisphere 12.4
1880 Male, age 80, right hemisphere 11.7
2430 Male, age 75, right hemisphere 10.8
2689 Female, age 94, right hemisphere 10.5
1970 Female, age 85, right hemisphere 8.4
1965 Female, age 91, left hemisphere 5.3
Intraparietal deep sulcus
nTPM: 12.8
2607 Female, age 67, right hemisphere 15.1
2600 Female, age 94, right hemisphere 14.9
2798 Male, age 76, left hemisphere 13.6
2230 Male, age 61, right hemisphere 11.4
2102 Female, age 91, left hemisphere 11.0
2669 Male, age 75, left hemisphere 10.8
Lingual gyrus
nTPM: 9.5
1893 Male, age 76, left hemisphere 11.4
2688 Male, age 75, right hemisphere 10.0
2073 Female, age 85, left hemisphere 9.5
2838 Male, age 80, right hemisphere 8.6
2618 Female, age 94, left hemisphere 8.2
Middle cingulate cortex
nTPM: 8.7
2640 Female, age 94, right hemisphere 14.0
2539 Male, age 75, left hemisphere 7.8
2633 Male, age 74, left hemisphere 7.7
2357 Female, age 67, right hemisphere 7.5
2028 Female, age 85, left hemisphere 6.8
Middle temporal gyrus
nTPM: 11.4
1819 Male, age 80, right hemisphere 16.3
2616 Female, age 94, left hemisphere 13.2
1799 Male, age 76, left hemisphere 12.5
2611 Male, age 75, right hemisphere 10.0
2034 Female, age 91, right hemisphere 5.0
Occipital cortex
nTPM: 9.2
2677 Female, age 67, right hemisphere 16.3
2470 Male, age 75, right hemisphere 8.8
1842 Male, age 76, right hemisphere 7.7
2608 Female, age 67, both hemispheres 6.8
2426 Male, age 75, midline 6.5
Olfactory area
nTPM: 8.4
1805 Female, age 85, right hemisphere 13.7
2440 Male, age 75, left hemisphere 9.2
2542 Male, age 74, left hemisphere 8.7
2352 Female, age 94, right hemisphere 6.3
2756 Female, age 67, right hemisphere 6.3
2222 Female, age 67, right hemisphere 6.2
Olfactory tubercle
nTPM: 10.1
1846 Male, age 80, right hemisphere 16.0
2856 Male, age 75, right hemisphere 9.0
2487 Female, age 94, left hemisphere 8.9
1998 Female, age 91, both hemispheres 6.6
Orbitofrontal gyrus, anterior
nTPM: 19.4
2863 Female, age 85, right hemisphere 36.4
2864 Female, age 67, left hemisphere 14.2
2862 Female, age 85, left hemisphere 7.5
Paracentral lobule, anterior
nTPM: 12.3
1776 Female, age 85, right hemisphere 19.1
2340 Female, age 67, right hemisphere 15.7
1754 Male, age 75, left hemisphere 13.4
1926 Male, age 61, left hemisphere 13.2
2638 Female, age 94, right hemisphere 6.2
2474 Male, age 74, left hemisphere 6.1
Paracentral lobule, posterior
nTPM: 8.8
1775 Female, age 85, right hemisphere 15.1
2551 Female, age 94, right hemisphere 12.8
1764 Male, age 74, right hemisphere 9.4
2446 Male, age 75, left hemisphere 6.6
2345 Male, age 61, left hemisphere 0.2
Parietal operculum
nTPM: 9.4
2719 Male, age 75, left hemisphere 14.1
1763 Male, age 74, left hemisphere 8.0
2356 Female, age 67, right hemisphere 8.0
2552 Female, age 94, right hemisphere 7.6
Parieto-insular cortex
nTPM: 9.5
1976 Female, age 91, right hemisphere 15.6
2831 Male, age 76, right hemisphere 11.0
2232 Male, age 61, right hemisphere 7.4
2508 Female, age 94, right hemisphere 7.4
2671 Male, age 75, left hemisphere 6.2
Parieto-occipital transitional area
nTPM: 10.5
1784 Male, age 76, right hemisphere 13.4
2674 Female, age 94, right hemisphere 11.0
2683 Female, age 67, left hemisphere 10.8
2468 Male, age 75, left hemisphere 10.1
2270 Male, age 61, right hemisphere 7.4
Piriform cortex
nTPM: 18.7
2347 Male, age 75, right hemisphere 27.6
2153 Female, age 85, left hemisphere 9.7
Postcentral gyrus
nTPM: 9.8
2533 Male, age 75, right hemisphere 9.8
Postcentral gyrus, dorsal
nTPM: 17.5
2339 Female, age 67, right hemisphere 35.3
2477 Female, age 94, right hemisphere 22.1
1836 Female, age 85, right hemisphere 16.9
2151 Male, age 61, left hemisphere 12.6
2350 Male, age 75, left hemisphere 11.0
2544 Male, age 74, left hemisphere 7.2
Postcentral gyrus, middle
nTPM: 12.0
2248 Male, age 61, left hemisphere 15.5
2545 Male, age 74, left hemisphere 14.8
1897 Female, age 85, right hemisphere 13.1
2146 Female, age 67, right hemisphere 10.8
2444 Male, age 75, left hemisphere 5.6
Postcentral gyrus, ventral
nTPM: 10.1
2836 Female, age 94, right hemisphere 12.0
2445 Male, age 75, left hemisphere 9.5
2024 Female, age 85, right hemisphere 8.8
Posterior cingulate cortex
nTPM: 12.5
2553 Female, age 94, right hemisphere 14.9
2473 Male, age 75, left hemisphere 12.8
1759 Male, age 74, right hemisphere 9.9
Posterior cingulate cortex, dorsal
nTPM: 10.3
2556 Female, age 67, right hemisphere 18.2
2343 Male, age 61, left hemisphere 14.6
2641 Female, age 94, right hemisphere 10.9
2076 Female, age 85, right hemisphere 7.7
2634 Male, age 74, left hemisphere 6.2
2540 Male, age 75, right hemisphere 4.0
Posterior cingulate cortex, ventral
nTPM: 9.2
2541 Male, age 75, right hemisphere 13.4
2448 Female, age 67, right hemisphere 12.4
1762 Female, age 94, right hemisphere 9.7
2635 Male, age 74, left hemisphere 7.7
2346 Male, age 61, left hemisphere 7.2
1994 Female, age 85, right hemisphere 5.0
Posterior insular cortex
nTPM: 8.4
2603 Female, age 94, left hemisphere 11.1
2832 Female, age 91, right hemisphere 10.2
1823 Male, age 76, right hemisphere 8.4
2597 Male, age 75, left hemisphere 8.3
2511 Female, age 67, right hemisphere 7.8
2231 Male, age 61, left hemisphere 4.6
Precentral gyrus
nTPM: 6.3
2557 Male, age 75, right hemisphere 6.3
Precentral gyrus, dorsal
nTPM: 12.8
1756 Male, age 74, left hemisphere 16.3
2476 Female, age 94, right hemisphere 15.2
2354 Female, age 67, right hemisphere 10.8
2442 Male, age 75, left hemisphere 9.0
Precentral gyrus, middle
nTPM: 14.1
2475 Male, age 74, right hemisphere 23.9
1969 Female, age 67, right hemisphere 18.5
2443 Male, age 75, left hemisphere 11.1
1909 Male, age 61, left hemisphere 11.0
2549 Female, age 94, right hemisphere 6.3
Precentral gyrus, ventral
nTPM: 16.6
2662 Female, age 67, right hemisphere 39.8
2630 Male, age 75, left hemisphere 9.8
2550 Female, age 94, right hemisphere 8.9
2678 Male, age 74, left hemisphere 7.8
Precuneus
nTPM: 12.0
2467 Male, age 75, right hemisphere 20.5
1782 Male, age 76, right hemisphere 16.0
2510 Female, age 67, right hemisphere 12.4
2673 Female, age 94, right hemisphere 9.8
2594 Male, age 61, left hemisphere 7.3
1780 Female, age 91, right hemisphere 6.1
Premotor cortex, dorsal
nTPM: 11.1
1878 Female, age 85, right hemisphere 12.8
2027 Male, age 61, left hemisphere 12.5
2554 Female, age 67, right hemisphere 10.9
2631 Male, age 74, left hemisphere 9.8
2536 Male, age 75, left hemisphere 9.7
Premotor cortex, ventral
nTPM: 10.7
1777 Female, age 67, left hemisphere 19.8
2349 Male, age 75, left hemisphere 13.1
1779 Male, age 61, left hemisphere 9.7
1881 Female, age 85, right hemisphere 8.6
1757 Male, age 74, left hemisphere 8.3
2637 Female, age 94, right hemisphere 5.0
Retrosplenial cortex
nTPM: 12.7
1914 Male, age 76, right hemisphere 14.2
1951 Male, age 61, right hemisphere 12.7
2675 Female, age 94, left hemisphere 11.2
Subcentral gyrus, S2
nTPM: 9.7
2072 Male, age 61, left hemisphere 12.3
2762 Male, age 74, left hemisphere 12.1
2839 Female, age 94, right hemisphere 10.1
2351 Male, age 75, left hemisphere 10.0
2555 Female, age 67, right hemisphere 8.2
1964 Female, age 85, right hemisphere 5.5
Superior parietal lobule
nTPM: 12.7
1992 Female, age 91, right hemisphere 18.0
1800 Male, age 76, right hemisphere 17.3
2605 Female, age 67, right hemisphere 13.3
2229 Male, age 61, right hemisphere 8.5
2672 Female, age 94, right hemisphere 6.4
Superior temporal gyrus
nTPM: 10.8
1844 Female, age 91, left hemisphere 18.5
2025 Male, age 80, right hemisphere 9.4
2615 Female, age 94, left hemisphere 8.9
2687 Male, age 75, right hemisphere 8.9
1843 Male, age 76, left hemisphere 8.2
Supplementary motor cortex
nTPM: 9.7
2632 Male, age 74, left hemisphere 11.9
1993 Male, age 61, left hemisphere 10.7
2548 Female, age 94, right hemisphere 9.7
2537 Male, age 75, left hemisphere 6.6
Supramarginal gyrus
nTPM: 7.7
2601 Female, age 94, left hemisphere 9.0
1991 Female, age 91, right hemisphere 8.5
2415 Male, age 61, left hemisphere 7.9
1798 Male, age 76, right hemisphere 7.6
2513 Female, age 72, left hemisphere 5.4
Temporal pole
nTPM: 16.6
1853 Female, age 85, right hemisphere 23.7
1832 Female, age 91, left hemisphere 19.3
2518 Male, age 75, right hemisphere 18.4
1826 Male, age 76, right hemisphere 12.2
2612 Female, age 94, left hemisphere 9.3
Temporo-insular cortex, parainsular gyrus
nTPM: 9.3
2512 Female, age 67, right hemisphere 11.4
2264 Female, age 91, right hemisphere 10.8
2598 Male, age 75, left hemisphere 10.3
2676 Female, age 94, right hemisphere 8.9
1802 Male, age 76, left hemisphere 8.0
2416 Male, age 61, right hemisphere 6.6
Temporo-occipital transitional zone
nTPM: 11.2
1793 Male, age 80, right hemisphere 14.4
1900 Male, age 76, left hemisphere 11.6
2251 Female, age 85, right hemisphere 7.7
Transversal temporal gyrus, anterior
nTPM: 9.1
1888 Female, age 91, left hemisphere 11.2
1809 Male, age 76, right hemisphere 10.2
2522 Female, age 94, left hemisphere 9.3
2610 Male, age 75, right hemisphere 7.9
1910 Male, age 80, right hemisphere 7.0
Transversal temporal gyrus, posterior
nTPM: 8.7
1922 Male, age 76, left hemisphere 9.6
1967 Female, age 91, right hemisphere 9.6
2833 Male, age 80, right hemisphere 8.3
2520 Male, age 75, right hemisphere 8.1
2614 Female, age 94, left hemisphere 8.0

CEREBRAL CORTEX - HPA PFC Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

31.8
Sample id Sample description nTPM
Anterior cingulate gyrus, pregenual-dorsal
nTPM: 19.1
1518 Female, age 67, right hemisphere 27.0
1512 Male, age 75, left hemisphere 26.8
1513 Male, age 74, left hemisphere 23.4
1511 Male, age 61, right hemisphere 19.8
1516 Female, age 85, left hemisphere 18.4
1510 Male, age 61, left hemisphere 17.0
1514 Male, age 74, right hemisphere 16.5
1517 Female, age 67, left hemisphere 14.7
1515 Female, age 94, right hemisphere 7.7
Anterior cingulate gyrus, pregenual-ventral
nTPM: 18.7
1520 Male, age 75, right hemisphere 29.7
1523 Female, age 67, left hemisphere 19.2
1522 Male, age 74, right hemisphere 17.2
1521 Male, age 74, left hemisphere 14.1
1519 Male, age 61, left hemisphere 13.5
Anterior cingulate gyrus, subgenual
nTPM: 21.7
1530 Female, age 67, right hemisphere 32.6
1526 Male, age 75, right hemisphere 28.4
1525 Male, age 75, left hemisphere 25.6
1524 Male, age 61, left hemisphere 19.1
1527 Male, age 74, left hemisphere 16.8
1529 Female, age 85, left hemisphere 15.5
1528 Male, age 74, right hemisphere 13.9
Dorsolateral prefrontal cortex
nTPM: 23.8
1446 Male, age 74, right hemisphere 32.8
1445 Male, age 75, right hemisphere 31.1
1444 Male, age 75, left hemisphere 28.0
1447 Female, age 94, left hemisphere 21.5
1449 Female, age 85, right hemisphere 19.1
1448 Female, age 94, right hemisphere 17.3
1450 Female, age 67, right hemisphere 16.9
Dorsomedial prefrontal cortex
nTPM: 21.7
1439 Male, age 61, left hemisphere 28.7
1440 Male, age 61, right hemisphere 22.9
1441 Male, age 75, left hemisphere 22.8
1442 Male, age 75, right hemisphere 22.3
1443 Female, age 67, right hemisphere 11.8
Frontal cortex
nTPM: 31.8
1582 Female, age 67, left hemisphere 46.6
1576 Male, age 74, left hemisphere 40.8
1583 Female, age 67, right hemisphere 40.2
1581 Female, age 85, right hemisphere 36.9
1580 Female, age 85, left hemisphere 36.2
1572 Male, age 61, left hemisphere 35.0
1575 Male, age 75, right hemisphere 31.0
1574 Male, age 75, left hemisphere 27.5
1577 Male, age 74, right hemisphere 26.6
1579 Female, age 94, right hemisphere 26.5
1573 Male, age 61, right hemisphere 20.3
1578 Female, age 94, left hemisphere 14.2
Frontomarginal cortex
nTPM: 24.5
1473 Female, age 67, right hemisphere 37.1
1471 Female, age 85, left hemisphere 34.0
1467 Male, age 75, right hemisphere 29.9
1466 Male, age 61, right hemisphere 26.5
1468 Male, age 74, left hemisphere 25.4
1465 Male, age 61, left hemisphere 23.0
1469 Female, age 94, left hemisphere 16.4
1472 Female, age 67, left hemisphere 16.4
1470 Female, age 94, right hemisphere 12.3
Frontopolar cortex
nTPM: 30.0
1464 Female, age 67, right hemisphere 42.6
1461 Male, age 75, right hemisphere 38.5
1460 Male, age 75, left hemisphere 32.4
1458 Male, age 61, left hemisphere 31.6
1459 Male, age 61, right hemisphere 30.8
1463 Female, age 67, left hemisphere 19.7
1462 Female, age 94, left hemisphere 14.3
Gyrus rectus
nTPM: 23.8
1481 Female, age 67, left hemisphere 37.2
1476 Male, age 75, left hemisphere 32.3
1480 Female, age 85, left hemisphere 32.1
1477 Male, age 75, right hemisphere 30.4
1475 Male, age 61, right hemisphere 25.5
1479 Female, age 94, right hemisphere 13.3
1474 Male, age 61, left hemisphere 11.4
1478 Female, age 94, left hemisphere 8.4
Inferior frontal gyrus, orbital
nTPM: 20.7
1501 Male, age 61, right hemisphere 36.5
1509 Female, age 67, right hemisphere 27.0
1502 Male, age 75, left hemisphere 25.5
1503 Male, age 75, right hemisphere 24.2
1505 Male, age 74, right hemisphere 22.8
1508 Female, age 85, right hemisphere 21.5
1504 Male, age 74, left hemisphere 17.4
1500 Male, age 61, left hemisphere 14.2
1507 Female, age 85, left hemisphere 9.4
1506 Female, age 94, left hemisphere 8.1
Inferior frontal gyrus, triangular
nTPM: 20.4
1547 Female, age 85, left hemisphere 31.1
1549 Female, age 67, left hemisphere 27.5
1548 Female, age 85, right hemisphere 24.4
1544 Male, age 75, right hemisphere 21.6
1542 Male, age 61, left hemisphere 20.3
1543 Male, age 61, right hemisphere 16.5
1545 Male, age 74, right hemisphere 11.9
1546 Female, age 94, right hemisphere 9.8
Orbitofrontal gyrus, lateral
nTPM: 20.8
1499 Female, age 67, right hemisphere 32.4
1494 Male, age 75, left hemisphere 25.8
1498 Female, age 85, right hemisphere 24.2
1493 Male, age 61, right hemisphere 20.5
1496 Female, age 94, right hemisphere 16.5
1497 Female, age 85, left hemisphere 13.4
1495 Female, age 94, left hemisphere 12.5
Orbitofrontal gyrus, medial
nTPM: 30.4
1484 Male, age 75, right hemisphere 43.0
1492 Female, age 67, right hemisphere 40.9
1482 Male, age 61, left hemisphere 38.1
1489 Female, age 85, left hemisphere 33.6
1483 Male, age 75, left hemisphere 33.3
1490 Female, age 85, right hemisphere 31.6
1485 Male, age 74, left hemisphere 31.4
1491 Female, age 67, left hemisphere 30.8
1488 Female, age 94, right hemisphere 20.6
1487 Female, age 94, left hemisphere 17.4
1486 Male, age 74, right hemisphere 14.1
Orbitofrontal gyrus, posterior
nTPM: 17.7
1534 Male, age 75, right hemisphere 28.9
1541 Female, age 67, right hemisphere 28.6
1539 Female, age 85, right hemisphere 26.3
1531 Male, age 61, left hemisphere 20.3
1532 Male, age 61, right hemisphere 18.4
1533 Male, age 75, left hemisphere 17.2
1537 Female, age 94, right hemisphere 15.8
1538 Female, age 85, left hemisphere 15.1
1535 Male, age 74, left hemisphere 13.0
1536 Female, age 94, left hemisphere 8.3
1540 Female, age 67, left hemisphere 3.0
Subcallosal gyrus
nTPM: 24.4
1561 Female, age 67, right hemisphere 36.0
1552 Male, age 75, left hemisphere 35.5
1559 Female, age 85, right hemisphere 34.6
1550 Male, age 61, left hemisphere 33.7
1560 Female, age 67, left hemisphere 30.4
1554 Male, age 74, left hemisphere 24.8
1558 Female, age 85, left hemisphere 22.8
1551 Male, age 61, right hemisphere 21.4
1553 Male, age 75, right hemisphere 17.6
1555 Male, age 74, right hemisphere 15.5
1557 Female, age 94, right hemisphere 11.3
1556 Female, age 94, left hemisphere 9.0
Superior frontal gyrus
nTPM: 26.4
1570 Female, age 85, right hemisphere 39.2
1569 Female, age 85, left hemisphere 32.9
1571 Female, age 67, right hemisphere 30.0
1565 Male, age 75, right hemisphere 27.4
1563 Male, age 61, right hemisphere 26.4
1564 Male, age 75, left hemisphere 24.3
1562 Male, age 61, left hemisphere 23.3
1566 Male, age 74, right hemisphere 20.3
1568 Female, age 94, right hemisphere 20.1
1567 Female, age 94, left hemisphere 19.8
Temporal cortex
nTPM: 19.4
1596 Female, age 85, right hemisphere 33.4
1590 Male, age 61, right hemisphere 32.5
1591 Male, age 75, right hemisphere 21.3
1592 Male, age 74, left hemisphere 19.2
1594 Female, age 94, left hemisphere 11.4
1593 Male, age 74, right hemisphere 9.3
1595 Female, age 94, right hemisphere 8.6
Ventrolateral prefrontal cortex
nTPM: 23.8
1456 Female, age 67, left hemisphere 38.3
1451 Male, age 75, right hemisphere 29.7
1455 Female, age 85, right hemisphere 28.3
1453 Male, age 74, right hemisphere 25.6
1452 Male, age 74, left hemisphere 17.8
1454 Female, age 94, left hemisphere 15.9
1457 Female, age 67, right hemisphere 10.8
Ventromedial prefrontal cortex
nTPM: 27.3
1438 Female, age 67, left hemisphere 35.9
1434 Male, age 75, right hemisphere 35.2
1436 Female, age 85, left hemisphere 30.8
1437 Female, age 85, right hemisphere 29.5
1432 Male, age 61, left hemisphere 28.5
1433 Male, age 61, right hemisphere 26.8
1435 Female, age 94, right hemisphere 4.3

CEREBRAL CORTEX - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

15.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Occipital cortex
Scaled Tags Per Million: 15.2
FF:10163-103B1 76 years, female 15.2
Postcentral gyrus
Scaled Tags Per Million: 14.6
FF:10032-101E5 44-52 years, mixed 14.6
Frontal lobe
Scaled Tags Per Million: 13.7
FF:10040-101F4 32-61 years, mixed 13.7
Insula
Scaled Tags Per Million: 11.2
FF:10039-101F3 20-68 years, mixed 11.2
Medial frontal gyrus
Scaled Tags Per Million: 10.9
FF:10150-102I6 76 years, female 10.9
Medial temporal gyrus
Scaled Tags Per Million: 15.1
FF:10183-103D3 60 years, female 16.1
FF:10156-103A3 76 years, female 14.1
Occipital lobe
Scaled Tags Per Million: 11.5
FF:10076-102A4 27 years, male 11.5
Occipital pole
Scaled Tags Per Million: 14.7
FF:10036-101E9 22-68 years, mixed 14.7
Paracentral gyrus
Scaled Tags Per Million: 12.9
FF:10035-101E8 22-69 years, mixed 12.9
Parietal lobe
Scaled Tags Per Million: 12.0
FF:10034-101E7 35-89 years, mixed 13.8
FF:10171-103B9 60 years, female 11.3
FF:10157-103A4 76 years, female 10.8
Temporal lobe
Scaled Tags Per Million: 12.6
FF:10031-101E4 32-61 years, mixed 12.6

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