MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:45.6 nTPM
HPA Brain:64.3 nTPM
GTEx:45.6 nTPM
FANTOM5:581.1 Scaled Tags Per Million
Pig:60.0 nTPM
Mouse:6.8 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 64.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 43.8
1870 Female, age 42, unknown 75.1
2411 Female, age 72, unknown 57.0
1830 Male, age 51, unknown 52.9
1833 Male, age 53, unknown 50.5
2586 Male, age 75, left hemisphere 38.9
2828 Female, age 72, unknown 38.4
2019 Male, age 18, unknown 36.3
1827 Male, age 72, unknown 33.3
2666 Male, age 74, left hemisphere 29.2
2219 Male, age 76, both hemispheres 26.8
Dorsal raphe nucleus
nTPM: 41.2
2016 Female, age 72, unknown 51.0
2750 Male, age 76, both hemispheres 50.9
1828 Male, age 53, unknown 38.7
2298 Female, age 72, unknown 34.1
2047 Male, age 72, unknown 31.2
Inferior colliculus
nTPM: 38.5
1848 Female, age 42, unknown 44.9
2849 Male, age 72, unknown 39.1
1890 Male, age 53, unknown 35.8
2097 Female, age 72, unknown 34.2
Median raphe nucleus
nTPM: 64.3
2220 Male, age 76, midline 64.3
Periaquaductal grey, anterior
nTPM: 31.8
1947 Male, age 18, unknown 33.7
2502 Female, age 75, unknown 33.3
1795 Male, age 51, unknown 28.4
Periaquaductal grey, dorsal
nTPM: 43.3
2850 Male, age 76, both hemispheres 59.7
2464 Female, age 72, unknown 45.6
1831 Male, age 72, unknown 34.1
1840 Male, age 53, unknown 33.9
Periaquaductal grey, lateral
nTPM: 44.8
2140 Male, age 76, both hemispheres 59.2
2053 Male, age 18, unknown 37.9
2272 Male, age 74, both hemispheres 37.2
Pretectal area
nTPM: 34.3
2667 Female, age 75, unknown 44.8
2224 Female, age 72, unknown 43.3
2825 Male, age 18, unknown 41.5
1815 Male, age 53, unknown 38.0
2316 Male, age 76, right hemisphere 36.7
1817 Female, age 42, unknown 33.8
2273 Male, age 74, both hemispheres 31.4
2407 Male, age 75, both hemispheres 27.3
1944 Female, age 72, unknown 27.2
1816 Male, age 51, unknown 27.0
2007 Male, age 72, unknown 26.7
Red nucleus
nTPM: 53.7
1821 Female, age 72, unknown 65.3
1954 Female, age 42, unknown 62.6
1865 Male, age 51, unknown 62.4
1904 Male, age 53, unknown 61.9
2227 Male, age 72, unknown 59.2
2503 Female, age 72, unknown 59.2
2769 Male, age 72, unknown 59.0
2823 Male, age 76, right hemisphere 50.0
2785 Male, age 18, unknown 44.1
2588 Male, age 74, left hemisphere 42.3
2725 Female, age 75, unknown 42.1
2584 Male, age 75, left hemisphere 36.5
Substantia nigra
nTPM: 46.9
2699 Male, age 18, unknown 78.7
2409 Female, age 72, unknown 58.1
2241 Male, age 72, unknown 53.3
1851 Male, age 51, unknown 51.6
1889 Female, age 72, unknown 43.9
2590 Female, age 75, unknown 42.6
1916 Female, age 42, unknown 41.4
2583 Male, age 75, right hemisphere 35.6
2665 Male, age 74, both hemispheres 35.2
1941 Male, age 53, unknown 29.0
Superior colliculus
nTPM: 42.2
1913 Female, age 42, unknown 83.2
1995 Male, age 72, unknown 65.7
2587 Male, age 74, left hemisphere 42.0
1796 Male, age 53, unknown 38.9
1839 Male, age 51, unknown 38.7
2668 Female, age 75, unknown 37.5
1895 Male, age 76, right hemisphere 34.2
2087 Female, age 72, unknown 33.0
2261 Male, age 18, unknown 27.4
2664 Male, age 75, both hemispheres 21.7
Ventral tegmental area
nTPM: 47.4
2021 Male, age 53, unknown 63.6
2410 Female, age 72, unknown 52.7
2223 Female, age 72, unknown 48.5
1915 Female, age 42, unknown 41.2
2218 Male, age 76, both hemispheres 39.8
1942 Male, age 51, unknown 38.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 45.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 45.6
Samples: 139

Max nTPM: 195.4
Min nTPM: 9.1
Std nTPM: 34.3
Median nTPM: 33.7
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 195.4
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 156.1
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 155.2
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 144.7
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 132.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 131.4
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 119.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 117.7
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 115.9
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 102.9
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 101.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 581.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 581.1
FF:10158-103A5 76 years, female 581.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 60.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 50.4
Samples: 4

Max nTPM: 65.7
Min nTPM: 31.6
Sample A Female 31.6
Sample B Female 55.6
Sample C Male 48.7
Sample D Male 65.7
Midbrain
nTPM: 49.4
Samples: 4

Max nTPM: 73.4
Min nTPM: 29.2
Sample A Female 52.3
Sample B Female 73.4
Sample C Male 42.7
Sample D Male 29.2
Periaqueductal gray
nTPM: 60.0
Samples: 3

Max nTPM: 70.4
Min nTPM: 49.6
Sample B Female 70.4
Sample C Male 60.1
Sample D Male 49.6
Superior colliculi
nTPM: 51.1
Samples: 4

Max nTPM: 94.7
Min nTPM: 27.0
Sample A Female 27.0
Sample B Female 94.7
Sample C Male 41.6
Sample D Male 41.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 6.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 6.8
Samples: 4

Max nTPM: 7.6
Min nTPM: 6.2
Sample A Male 6.2
Sample B Male 6.9
Sample C Female 7.6
Sample D Female 6.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
68546548 Antisense, RP_050120_02_F10, Mouse strain C57BL/6J (56 days, male) 0.0

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