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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:89.2 nTPM
HPA Brain:34.8 nTPM
GTEx:89.2 nTPM
FANTOM5:55.8 Scaled Tags Per Million

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

34.8
Sample id Sample description nTPM
Amygdala
nTPM: 34.8
2695 Female, age 67, right hemisphere 44.1
2814 Male, age 76, right hemisphere 36.8
2514 Male, age 75, right hemisphere 34.7
1987 Female, age 91, left hemisphere 32.2
2517 Female, age 94, left hemisphere 26.5
Basal amygdala
nTPM: 32.4
2609 Male, age 75, right hemisphere 37.0
2243 Female, age 91, right hemisphere 36.5
1955 Male, age 76, both hemispheres 35.8
2110 Male, age 80, left hemisphere 31.2
2685 Female, age 94, left hemisphere 29.7
2827 Female, age 67, right hemisphere 24.1
Central amygdala
nTPM: 32.3
1905 Male, age 76, both hemispheres 35.2
2515 Male, age 75, right hemisphere 34.6
2701 Female, age 91, right hemisphere 34.1
2826 Female, age 94, left hemisphere 29.3
2239 Male, age 80, left hemisphere 28.3
Corticomedial amygdala
nTPM: 30.5
2829 Male, age 80, left hemisphere 33.7
2242 Female, age 91, right hemisphere 32.6
2428 Male, age 75, right hemisphere 31.8
2240 Male, age 76, both hemispheres 31.3
2429 Female, age 94, left hemisphere 27.5
2535 Female, age 67, right hemisphere 25.9
Lateral amygdala
nTPM: 29.3
2516 Male, age 75, right hemisphere 33.6
1883 Male, age 76, both hemispheres 32.3
2255 Female, age 91, right hemisphere 29.8
2256 Male, age 80, left hemisphere 27.8
2534 Female, age 94, left hemisphere 27.0
2830 Female, age 67, right hemisphere 25.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

89.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 89.2
Samples: 152

Max nTPM: 219.0
Min nTPM: 35.1
Std nTPM: 28.1
Median nTPM: 84.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 219.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 201.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 197.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 191.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 169.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 157.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 156.9
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 146.2
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 137.8
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 137.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 135.4
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 121.5
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 113.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 113.7
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 113.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 112.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 111.2
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 108.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 107.7
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 106.2
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 105.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 105.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 104.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 104.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 103.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 103.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 102.6
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 100.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 100.6
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 100.4
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 100.1
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 100.1
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 99.8
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 99.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 99.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 99.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 99.4
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 98.7
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 98.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 98.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 98.1
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 97.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 97.5
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 97.0
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 97.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 96.6
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 96.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 96.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 94.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 94.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 94.0
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 93.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 93.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 93.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 93.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 93.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 92.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 91.8
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 91.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 91.2
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 90.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 90.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 90.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 89.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 89.5
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 89.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 89.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 88.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 88.6
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 88.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 88.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 88.1
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 87.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 86.5
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 86.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 85.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 84.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 84.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 84.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 83.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 83.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 83.4
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 83.0
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 82.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 82.1
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 82.1
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 81.6
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 81.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 80.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 80.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 80.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 79.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 79.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 79.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 78.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 78.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 78.5
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 78.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 78.4
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 78.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 76.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 76.1
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 76.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 75.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 75.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 75.1
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 75.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 74.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 74.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 73.4
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 73.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 72.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 72.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 72.2
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 72.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 72.0
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 71.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 71.4
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 71.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 70.8
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 70.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 69.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 68.7
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 68.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 67.2
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 67.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 66.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 66.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 66.4
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 66.1
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 66.1
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 65.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 64.9
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 62.6
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 61.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 61.1
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 61.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 60.2
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 59.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 59.7
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 59.4
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 59.1
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 58.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 58.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 58.2
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 56.5
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 55.2
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 55.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 55.0
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 51.6
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 43.8
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 35.1
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

55.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 55.8
FF:10151-102I7 76 years, female 55.8

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