MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:91.0 nTPM
HPA Brain:38.1 nTPM
GTEx:91.0 nTPM
FANTOM5:53.6 Scaled Tags Per Million

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 38.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 35.6
2586 Male, age 75, left hemisphere 42.5
1870 Female, age 42, unknown 41.0
2828 Female, age 72, unknown 39.5
1833 Male, age 53, unknown 34.8
1830 Male, age 51, unknown 33.7
2411 Female, age 72, unknown 33.7
1827 Male, age 72, unknown 33.6
2666 Male, age 74, left hemisphere 33.4
2019 Male, age 18, unknown 32.3
2219 Male, age 76, both hemispheres 31.8
Dorsal raphe nucleus
nTPM: 37.0
2047 Male, age 72, unknown 41.7
2298 Female, age 72, unknown 38.1
1828 Male, age 53, unknown 36.7
2016 Female, age 72, unknown 36.2
2750 Male, age 76, both hemispheres 32.3
Inferior colliculus
nTPM: 37.1
2849 Male, age 72, unknown 45.8
1848 Female, age 42, unknown 35.9
1890 Male, age 53, unknown 35.8
2097 Female, age 72, unknown 31.0
Median raphe nucleus
nTPM: 35.1
2220 Male, age 76, midline 35.1
Periaquaductal grey, anterior
nTPM: 33.7
2502 Female, age 75, unknown 34.7
1795 Male, age 51, unknown 33.7
1947 Male, age 18, unknown 32.8
Periaquaductal grey, dorsal
nTPM: 38.1
2850 Male, age 76, both hemispheres 44.7
1840 Male, age 53, unknown 37.6
1831 Male, age 72, unknown 35.9
2464 Female, age 72, unknown 34.1
Periaquaductal grey, lateral
nTPM: 36.5
2053 Male, age 18, unknown 39.8
2140 Male, age 76, both hemispheres 34.9
2272 Male, age 74, both hemispheres 34.9
Pretectal area
nTPM: 36.1
2407 Male, age 75, both hemispheres 39.0
2825 Male, age 18, unknown 39.0
1817 Female, age 42, unknown 38.2
2273 Male, age 74, both hemispheres 37.8
2667 Female, age 75, unknown 37.8
2224 Female, age 72, unknown 37.6
1816 Male, age 51, unknown 36.0
1815 Male, age 53, unknown 35.6
1944 Female, age 72, unknown 33.8
2007 Male, age 72, unknown 31.2
2316 Male, age 76, right hemisphere 30.7
Red nucleus
nTPM: 37.8
1904 Male, age 53, unknown 42.7
2503 Female, age 72, unknown 41.4
2725 Female, age 75, unknown 40.8
1865 Male, age 51, unknown 39.7
2769 Male, age 72, unknown 39.5
2227 Male, age 72, unknown 37.9
2823 Male, age 76, right hemisphere 37.1
1821 Female, age 72, unknown 36.3
2785 Male, age 18, unknown 35.9
1954 Female, age 42, unknown 35.5
2588 Male, age 74, left hemisphere 33.8
2584 Male, age 75, left hemisphere 33.1
Substantia nigra
nTPM: 35.0
2699 Male, age 18, unknown 46.2
1916 Female, age 42, unknown 40.0
2665 Male, age 74, both hemispheres 38.1
1889 Female, age 72, unknown 36.8
1851 Male, age 51, unknown 36.7
1941 Male, age 53, unknown 35.1
2583 Male, age 75, right hemisphere 31.8
2409 Female, age 72, unknown 29.1
2590 Female, age 75, unknown 28.5
2241 Male, age 72, unknown 27.4
Superior colliculus
nTPM: 36.5
2664 Male, age 75, both hemispheres 42.3
2587 Male, age 74, left hemisphere 42.1
1995 Male, age 72, unknown 39.5
1913 Female, age 42, unknown 38.1
2668 Female, age 75, unknown 37.5
1839 Male, age 51, unknown 36.1
1895 Male, age 76, right hemisphere 34.6
1796 Male, age 53, unknown 34.5
2087 Female, age 72, unknown 33.7
2261 Male, age 18, unknown 27.0
Ventral tegmental area
nTPM: 36.0
1915 Female, age 42, unknown 38.8
2223 Female, age 72, unknown 36.7
2218 Male, age 76, both hemispheres 36.3
2410 Female, age 72, unknown 35.2
2021 Male, age 53, unknown 35.1
1942 Male, age 51, unknown 34.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 91.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 91.0
Samples: 139

Max nTPM: 178.8
Min nTPM: 44.4
Std nTPM: 27.5
Median nTPM: 84.6
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 178.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 175.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 163.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 157.6
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 157.0
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 147.2
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 142.8
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 140.2
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 137.7
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 137.2
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 136.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 53.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 53.6
FF:10158-103A5 76 years, female 53.6

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