We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
151.6
Sample id
Sample description
nTPM
Amygdala nTPM: 134.5
2695
Female, age 67, right hemisphere
188.7
1987
Female, age 91, left hemisphere
131.7
2517
Female, age 94, left hemisphere
125.9
2814
Male, age 76, right hemisphere
118.3
2514
Male, age 75, right hemisphere
107.8
Basal amygdala nTPM: 148.2
2609
Male, age 75, right hemisphere
197.7
2243
Female, age 91, right hemisphere
152.2
2110
Male, age 80, left hemisphere
148.0
2685
Female, age 94, left hemisphere
142.2
1955
Male, age 76, both hemispheres
132.0
2827
Female, age 67, right hemisphere
117.0
Central amygdala nTPM: 151.6
2239
Male, age 80, left hemisphere
193.7
2515
Male, age 75, right hemisphere
182.0
1905
Male, age 76, both hemispheres
127.7
2701
Female, age 91, right hemisphere
127.7
2826
Female, age 94, left hemisphere
127.1
Corticomedial amygdala nTPM: 138.9
2829
Male, age 80, left hemisphere
165.7
2428
Male, age 75, right hemisphere
146.6
2429
Female, age 94, left hemisphere
140.5
2535
Female, age 67, right hemisphere
137.4
2242
Female, age 91, right hemisphere
122.5
2240
Male, age 76, both hemispheres
120.9
Lateral amygdala nTPM: 147.8
2516
Male, age 75, right hemisphere
180.9
2255
Female, age 91, right hemisphere
156.4
2256
Male, age 80, left hemisphere
151.0
1883
Male, age 76, both hemispheres
146.1
2830
Female, age 67, right hemisphere
129.4
2534
Female, age 94, left hemisphere
122.9
AMYGDALA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
106.8
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 106.8
Samples: 152
Max nTPM: 229.5
Min nTPM: 33.2
Std nTPM: 35.6
Median nTPM: 105.8
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
229.5
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
227.7
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
219.9
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
203.5
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
181.5
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
180.4
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
180.3
GTEX-NL3H-0011-R4a-SM-2I3GK
60-69 years, male
169.0
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
163.7
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
163.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
157.6
GTEX-1JJEA-0011-R4a-SM-EXUTC
60-69 years, male
153.7
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
153.4
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
152.2
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
151.9
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
151.0
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
148.0
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
146.0
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
145.2
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
145.0
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
142.7
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
142.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
140.1
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
137.7
GTEX-ZE9C-0011-R4a-SM-4WKH6
60-69 years, male
134.9
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
134.7
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
134.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
131.8
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
131.5
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
131.0
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
130.1
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
128.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
127.2
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
126.9
GTEX-1JN6P-0011-R4a-SM-EZ6MS
60-69 years, male
126.6
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
125.7
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
125.7
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
124.9
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
124.4
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
124.0
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
123.4
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
122.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
121.8
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
121.2
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
121.1
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
120.8
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
120.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
120.6
GTEX-T5JC-0011-R4A-SM-32PLT
20-29 years, male
119.7
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
118.6
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
118.1
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
117.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
116.3
GTEX-P44G-0011-R4A-SM-2I3FB
30-39 years, male
116.2
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
114.8
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
114.2
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
113.3
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
113.0
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
112.7
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
112.6
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
112.0
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
112.0
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
111.9
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
111.7
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
110.8
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
110.7
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
110.4
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
110.4
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
110.1
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
109.7
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
109.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
109.4
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
106.9
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
106.7
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
106.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
106.4
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
105.2
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
104.7
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
104.4
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
103.7
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
103.2
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
103.2
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
103.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
102.9
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
100.6
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
99.8
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
99.6
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
97.8
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
96.8
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
95.8
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
95.1
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
95.0
GTEX-Y8DK-0011-R4A-SM-EXUR1
60-69 years, male
94.5
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
92.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
92.3
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
92.3
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
92.2
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
91.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
91.3
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
91.2
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
90.7
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
90.6
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
90.5
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
90.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
90.2
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
89.2
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
87.3
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
87.0
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
86.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
86.2
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
85.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
85.4
GTEX-15DDE-0011-R4b-SM-7KULI
50-59 years, female
84.6
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
84.2
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
83.7
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
82.7
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
82.6
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
82.6
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
82.0
GTEX-R55E-0011-R4A-SM-2TC5H
20-29 years, male
81.6
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
81.2
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
79.1
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
79.1
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
77.5
GTEX-18464-0011-R4a-SM-7LG6T
50-59 years, male
73.5
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
73.3
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
72.3
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
72.1
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
71.2
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
70.4
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
70.3
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
69.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
69.5
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
67.6
GTEX-T6MN-0011-R4A-SM-32QPG
50-59 years, male
66.8
GTEX-183WM-0011-R4a-SM-7LG6S
70-79 years, female
66.7
GTEX-145MI-0011-R4b-SM-5PNZH
60-69 years, female
66.0
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
66.0
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
65.0
GTEX-1H2FU-0011-R4a-SM-CL551
60-69 years, female
63.1
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
61.0
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
59.3
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
58.6
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
50.9
GTEX-1CB4J-0011-R4b-SM-9WG5P
60-69 years, male
50.9
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
47.1
GTEX-UTHO-0011-R4A-SM-3GIJP
60-69 years, male
46.8
GTEX-QDT8-0011-R4A-SM-32PKM
30-39 years, female
45.8
GTEX-N7MS-0011-R4a-SM-2HMKW
60-69 years, male
44.2
GTEX-P44H-0011-R4A-SM-2XCEW
40-49 years, male
40.7
GTEX-QMR6-0011-R4A-SM-32PKU
50-59 years, male
34.9
GTEX-X4EP-0011-R4B-SM-3P627
60-69 years, female
33.2
Show allShow less
AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
92.1
Mouse sample
Sample description
nTPM
Amygdala nTPM: 92.1
Samples: 4
Max nTPM: 107.8
Min nTPM: 86.3
Sample A
Male
86.5
Sample B
Male
87.8
Sample C
Female
107.8
Sample D
Female
86.3
AMYGDALA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
