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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
125.4
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 85.4
1984
Male, age 76, both hemispheres
111.7
2090
Male, age 80, both hemispheres
91.0
2301
Female, age 85, both hemispheres
80.7
2188
Female, age 91, both hemispheres
58.2
Dorsal cochlear nucleus nTPM: 118.1
2058
Male, age 76, both hemispheres
142.8
2370
Male, age 61, both hemispheres
140.2
2378
Male, age 80, both hemispheres
112.9
2802
Male, age 74, right hemisphere
112.7
2187
Female, age 91, both hemispheres
81.7
Dorsal tegmental nucleus nTPM: 101.6
2083
Male, age 80, both hemispheres
114.7
1936
Male, age 76, left hemisphere
110.6
2326
Male, age 74, both hemispheres
93.3
2358
Male, age 61, both hemispheres
87.7
Dorsolateral tegmental area nTPM: 92.6
2141
Male, age 76, both hemispheres
134.1
2654
Male, age 80, both hemispheres
108.6
2751
Female, age 85, both hemispheres
83.3
2360
Male, age 74, both hemispheres
76.6
2337
Male, age 61, both hemispheres
60.7
Kolliker-Fuse nucleus nTPM: 97.7
2315
Male, age 76, right hemisphere
121.7
2163
Male, age 80, both hemispheres
110.6
2793
Female, age 91, left hemisphere
60.7
Lateral lemniscal nuclei nTPM: 100.4
2453
Male, age 74, right hemisphere
122.0
2036
Male, age 80, both hemispheres
117.7
2169
Male, age 76, both hemispheres
108.6
2746
Female, age 85, left hemisphere
86.3
2320
Female, age 91, left hemisphere
67.4
Lateral parabrachial nucleus nTPM: 89.3
2139
Female, age 85, right hemisphere
131.5
2013
Male, age 80, both hemispheres
82.6
2790
Male, age 61, both hemispheres
79.1
2792
Male, age 76, both hemispheres
64.1
Lateral vestibular nucleus nTPM: 125.3
2184
Male, age 76, both hemispheres
133.0
2311
Male, age 80, both hemispheres
117.6
Locus coeruleus nTPM: 109.6
1980
Male, age 76, both hemispheres
135.5
2317
Female, age 72, unknown
123.8
2162
Male, age 80, both hemispheres
114.7
2123
Female, age 91, both hemispheres
112.2
2014
Male, age 55, unknown
112.0
2788
Male, age 74, unknown
87.0
2720
Male, age 74, both hemispheres
81.8
Medial parabrachial nucleus nTPM: 94.3
2156
Male, age 61, both hemispheres
114.3
2786
Male, age 76, both hemispheres
104.7
2854
Male, age 80, both hemispheres
89.1
2463
Female, age 85, right hemisphere
84.6
2170
Female, age 91, both hemispheres
78.6
Medial periolivary nuclei nTPM: 106.8
2171
Female, age 85, both hemispheres
127.8
2063
Male, age 76, both hemispheres
126.4
2791
Male, age 74, right hemisphere
113.1
2458
Female, age 91, both hemispheres
86.9
2081
Male, age 80, both hemispheres
79.7
Motor facial nucleus nTPM: 120.8
2795
Female, age 91, both hemispheres
167.1
2062
Male, age 76, both hemispheres
145.4
2126
Male, age 61, both hemispheres
125.8
2327
Male, age 80, both hemispheres
107.7
2365
Male, age 74, right hemisphere
106.4
2697
Female, age 85, both hemispheres
72.4
Motor trigeminal nucleus nTPM: 98.7
2335
Male, age 61, both hemispheres
130.9
2309
Male, age 76, both hemispheres
106.9
2079
Male, age 80, both hemispheres
90.6
2560
Male, age 74, both hemispheres
86.1
2321
Female, age 91, both hemispheres
79.2
Nuclei of the trapezoid body nTPM: 125.4
2735
Female, age 85, both hemispheres
137.4
1983
Male, age 76, both hemispheres
132.3
2368
Female, age 91, both hemispheres
130.5
2159
Male, age 61, both hemispheres
128.2
2166
Male, age 80, both hemispheres
98.8
Nucleus raphe magnus nTPM: 117.6
2455
Male, age 74, both hemispheres
136.4
2160
Male, age 61, both hemispheres
134.7
2051
Male, age 76, both hemispheres
119.4
2172
Female, age 85, both hemispheres
118.5
2328
Male, age 80, both hemispheres
109.0
2459
Female, age 91, both hemispheres
87.5
Paramedian reticular nucleus nTPM: 117.7
2313
Male, age 61, both hemispheres
168.3
2057
Male, age 80, both hemispheres
130.7
2050
Female, age 85, both hemispheres
104.5
2052
Male, age 76, both hemispheres
67.4
Pedunculopontine tegmental nucleus nTPM: 91.7
1921
Female, age 85, both hemispheres
104.0
2334
Male, age 80, both hemispheres
97.9
2338
Male, age 61, both hemispheres
73.3
Pontine nuclei nTPM: 91.1
2787
Female, age 85, both hemispheres
128.3
1968
Male, age 76, left hemisphere
114.5
1863
Male, age 55, unknown
103.3
2109
Female, age 72, unknown
96.7
2727
Male, age 61, right hemisphere
95.5
2115
Male, age 80, left hemisphere
81.4
2454
Male, age 74, left hemisphere
55.2
2319
Female, age 91, both hemispheres
54.0
Pontine raphe nucleus nTPM: 116.0
2853
Male, age 76, midline
128.0
2122
Female, age 85, midline
104.0
Posteroventral cochlear nucleus nTPM: 87.3
2371
Male, age 61, both hemispheres
114.6
2752
Female, age 85, both hemispheres
112.0
2070
Male, age 76, both hemispheres
104.5
2341
Male, age 80, both hemispheres
70.2
2135
Female, age 91, both hemispheres
35.3
Principal sensory trigeminal nucleus nTPM: 105.7
2324
Male, age 76, both hemispheres
145.8
2158
Male, age 61, both hemispheres
132.9
2008
Male, age 80, left hemisphere
89.9
2367
Female, age 91, left hemisphere
54.3
Reticular pontine nucleus, caudal nTPM: 94.1
2332
Male, age 80, right hemisphere
117.4
2092
Male, age 76, both hemispheres
114.9
2457
Female, age 91, both hemispheres
82.0
2559
Male, age 74, both hemispheres
61.9
Reticular pontine nucleus, oral nTPM: 82.6
2167
Male, age 76, both hemispheres
106.1
1939
Male, age 80, both hemispheres
104.4
2012
Female, age 85, both hemispheres
89.2
2361
Male, age 74, both hemispheres
57.9
2366
Female, age 91, both hemispheres
55.2
Reticulotegmental nucleus nTPM: 118.6
2333
Male, age 80, both hemispheres
136.3
2322
Female, age 91, both hemispheres
123.4
2325
Male, age 76, both hemispheres
117.6
2452
Male, age 74, both hemispheres
97.1
Spinal trigeminal nucleus, oral nTPM: 115.9
1978
Male, age 76, both hemispheres
128.4
2164
Male, age 80, both hemispheres
111.9
2737
Female, age 85, both hemispheres
107.4
Subcoeruleus area nTPM: 93.4
2323
Female, age 91, left hemisphere
114.9
2089
Male, age 76, left hemisphere
105.9
1958
Male, age 80, both hemispheres
89.1
2451
Male, age 74, both hemispheres
87.0
2369
Female, age 85, left hemisphere
69.9
Superior olive nTPM: 95.6
2364
Male, age 74, right hemisphere
107.8
2329
Male, age 80, right hemisphere
103.2
2561
Female, age 91, both hemispheres
93.2
2020
Male, age 76, both hemispheres
90.9
1875
Female, age 85, both hemispheres
82.9
Ventral periolivary nuclei nTPM: 109.3
2130
Female, age 85, both hemispheres
149.9
2165
Male, age 80, both hemispheres
129.7
2794
Female, age 91, left hemisphere
84.5
2023
Male, age 76, both hemispheres
72.9
Ventrolateral tegmental area, A5 NE cell group nTPM: 102.2
2449
Male, age 74, both hemispheres
113.3
2456
Female, age 91, both hemispheres
109.7
1959
Male, age 76, both hemispheres
107.2
2161
Male, age 80, both hemispheres
105.6
2840
Female, age 85, both hemispheres
94.4
2359
Male, age 61, both hemispheres
82.9
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
32.3
Pig sample
Sample description
nTPM
Pons nTPM: 32.3
Samples: 4
Max nTPM: 44.8
Min nTPM: 25.2
Sample A
Female
44.8
Sample B
Female
25.7
Sample C
Male
25.2
Sample D
Male
33.3
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
