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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1283.5 nTPM
HPA Brain:470.9 nTPM
GTEx:1283.5 nTPM
FANTOM5:346.8 Scaled Tags Per Million
Pig:507.0 nTPM
Mouse:35.6 nTPM
Allen mouse:3.4 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

470.9
Sample id Sample description nTPM
Amygdala
nTPM: 470.9
2695 Female, age 67, right hemisphere 618.9
2514 Male, age 75, right hemisphere 471.0
1987 Female, age 91, left hemisphere 433.6
2517 Female, age 94, left hemisphere 418.4
2814 Male, age 76, right hemisphere 412.7
Basal amygdala
nTPM: 370.0
2827 Female, age 67, right hemisphere 511.3
2110 Male, age 80, left hemisphere 409.2
2609 Male, age 75, right hemisphere 387.6
2685 Female, age 94, left hemisphere 334.4
1955 Male, age 76, both hemispheres 307.6
2243 Female, age 91, right hemisphere 270.0
Central amygdala
nTPM: 419.5
2826 Female, age 94, left hemisphere 676.5
2515 Male, age 75, right hemisphere 465.5
1905 Male, age 76, both hemispheres 370.6
2239 Male, age 80, left hemisphere 302.4
2701 Female, age 91, right hemisphere 282.5
Corticomedial amygdala
nTPM: 334.0
2428 Male, age 75, right hemisphere 408.7
2535 Female, age 67, right hemisphere 357.6
2829 Male, age 80, left hemisphere 351.2
2429 Female, age 94, left hemisphere 308.8
2240 Male, age 76, both hemispheres 303.5
2242 Female, age 91, right hemisphere 274.2
Lateral amygdala
nTPM: 454.4
2830 Female, age 67, right hemisphere 706.3
2516 Male, age 75, right hemisphere 511.3
2534 Female, age 94, left hemisphere 484.4
2256 Male, age 80, left hemisphere 374.3
1883 Male, age 76, both hemispheres 356.7
2255 Female, age 91, right hemisphere 293.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1283.5
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 1283.5
Samples: 152

Max nTPM: 4900.3
Min nTPM: 600.3
Std nTPM: 598.7
Median nTPM: 1124.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 4900.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 3854.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 3208.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 3181.7
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 3093.5
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 2636.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 2388.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 2330.8
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 2136.9
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 2132.1
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 2128.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 2025.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 2003.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 1964.1
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 1961.7
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 1950.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 1931.9
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 1900.2
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 1842.3
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 1810.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 1788.2
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 1764.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1759.2
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 1733.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 1732.9
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 1695.2
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 1599.2
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 1573.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 1566.6
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 1554.6
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 1547.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 1537.0
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 1526.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 1487.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 1486.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 1469.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 1449.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 1447.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 1418.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 1394.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 1363.1
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 1360.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 1354.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 1342.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 1331.2
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 1321.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 1316.5
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 1301.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 1292.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 1289.1
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 1285.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 1280.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 1278.5
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 1266.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 1249.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 1228.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 1219.1
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 1218.7
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 1210.2
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 1202.0
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 1200.9
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 1186.9
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 1179.0
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 1171.8
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 1167.6
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 1161.3
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 1161.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 1157.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 1157.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 1149.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 1149.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 1138.6
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 1131.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 1130.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 1126.9
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 1124.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 1124.0
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 1118.2
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 1114.8
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 1108.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 1105.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 1104.5
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 1103.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 1100.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 1099.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 1094.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 1092.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 1088.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 1085.2
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 1079.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 1077.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 1077.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 1075.3
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 1072.1
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 1060.5
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 1053.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 1053.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 1052.9
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 1049.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 1037.5
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 1036.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 1022.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 1022.3
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 1019.6
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 1017.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 1014.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 1009.0
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 993.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 987.0
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 974.8
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 972.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 962.1
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 954.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 951.8
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 943.3
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 928.7
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 918.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 917.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 910.6
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 909.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 899.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 892.1
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 882.2
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 864.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 862.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 861.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 840.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 838.0
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 822.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 813.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 795.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 794.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 787.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 787.5
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 784.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 777.6
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 766.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 759.1
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 755.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 754.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 749.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 749.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 742.7
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 712.4
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 688.8
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 685.4
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 665.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 664.1
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 641.6
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 629.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 612.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 600.3
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

346.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 346.8
FF:10151-102I7 76 years, female 346.8

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

507.0
Pig sample Sample description nTPM
Amygdala
nTPM: 507.0
Samples: 4

Max nTPM: 688.6
Min nTPM: 388.7
Sample A Female 688.6
Sample B Female 441.9
Sample C Male 508.9
Sample D Male 388.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

35.6
Mouse sample Sample description nTPM
Amygdala
nTPM: 35.6
Samples: 4

Max nTPM: 38.7
Min nTPM: 33.7
Sample A Male 35.5
Sample B Male 33.7
Sample C Female 38.7
Sample D Female 34.5

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

3.4
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 3.4
69873289 Antisense, RP_050510_04_H11, Mouse strain C57BL/6J (56 days, male) 6.8
70795718 Antisense, RP_050712_01_H01, Mouse strain C57BL/6J (56 days, male) 0.0

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