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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:305.2 nTPM
HPA Brain:131.4 nTPM
GTEx:305.2 nTPM
FANTOM5:322.8 Scaled Tags Per Million
Pig:299.2 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

131.4
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 107.0
1981 Female, age 72, midline 164.0
2048 Male, age 55, midline 105.0
2816 Male, age 47, midline 95.8
2565 Male, age 75, midline 85.7
2194 Female, age 79, both hemispheres 84.5
Cervical spinal cord, dorsal horn
nTPM: 131.4
2296 Male, age 66, both hemispheres 198.6
2173 Female, age 72, unknown 195.2
2069 Male, age 47, both hemispheres 147.7
1877 Male, age 55, unknown 101.0
2297 Male, age 75, both hemispheres 79.7
2721 Male, age 90, both hemispheres 66.2
Cervical spinal cord, ventral horn
nTPM: 112.5
2098 Female, age 72, unknown 191.0
2809 Male, age 90, both hemispheres 124.3
2068 Male, age 55, unknown 107.5
2480 Male, age 75, both hemispheres 96.7
2295 Male, age 66, both hemispheres 81.2
2820 Female, age 79, both hemispheres 74.4

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

305.2
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 305.2
Samples: 159

Max nTPM: 1076.0
Min nTPM: 74.7
Std nTPM: 122.8
Median nTPM: 285.0
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 1076.0
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 653.5
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 625.3
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 592.4
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 585.1
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 553.4
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 536.2
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 496.0
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 479.8
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 470.4
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 458.0
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 452.2
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 448.4
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 446.7
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 442.7
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 441.2
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 437.6
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 433.7
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 429.6
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 420.1
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 418.2
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 412.3
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 410.1
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 407.1
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 404.5
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 404.0
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 403.9
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 403.3
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 402.7
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 402.7
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 398.7
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 393.4
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 393.4
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 391.1
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 387.8
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 385.6
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 379.1
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 377.3
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 376.4
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 374.9
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 370.3
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 369.3
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 368.8
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 366.9
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 363.2
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 361.2
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 359.7
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 352.5
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 350.6
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 350.1
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 345.4
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 343.5
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 339.7
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 337.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 333.6
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 332.7
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 332.6
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 330.0
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 327.0
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 325.6
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 322.9
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 321.8
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 320.6
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 320.2
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 315.9
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 315.8
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 315.5
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 315.3
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 309.3
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 309.1
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 307.5
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 305.9
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 305.1
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 305.1
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 304.2
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 296.5
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 296.1
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 292.1
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 290.0
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 285.0
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 283.9
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 282.4
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 281.9
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 281.5
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 280.3
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 279.1
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 278.3
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 273.8
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 272.3
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 271.8
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 271.0
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 270.9
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 270.7
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 269.4
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 267.5
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 267.3
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 259.9
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 254.9
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 251.3
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 247.5
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 244.4
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 243.9
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 243.8
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 243.1
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 240.3
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 239.2
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 239.1
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 239.1
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 236.4
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 233.4
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 231.9
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 226.1
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 224.9
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 223.3
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 223.0
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 222.9
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 222.3
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 222.2
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 221.1
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 220.0
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 218.7
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 215.7
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 214.9
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 214.2
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 214.1
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 213.6
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 208.8
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 206.3
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 205.8
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 205.5
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 204.0
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 199.5
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 199.0
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 198.0
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 197.6
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 195.7
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 195.2
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 194.5
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 189.5
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 183.5
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 181.8
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 180.2
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 179.4
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 176.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 176.8
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 174.6
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 172.5
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 170.8
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 167.1
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 159.7
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 159.5
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 155.6
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 153.0
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 145.8
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 137.2
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 127.8
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 92.4
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 85.0
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 74.7
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

322.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 322.8
FF:10181-103D1 60 years, female 445.8
FF:10159-103A6 76 years, female 199.8

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

299.2
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 299.2
Samples: 4

Max nTPM: 393.7
Min nTPM: 236.6
Sample A Female 236.6
Sample B Female 295.6
Sample C Male 393.7
Sample D Male 270.8
Ventral spinal cord
nTPM: 287.7
Samples: 4

Max nTPM: 367.0
Min nTPM: 251.8
Sample A Female 257.0
Sample B Female 251.8
Sample C Male 274.8
Sample D Male 367.0

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