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BRAIN MEDULLA OBLONGATA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Medulla oblongata
MEDULLA OBLONGATA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:129.3 nTPM
FANTOM5:204.0 Scaled Tags Per Million
Pig:99.8 nTPM
Allen mouse:3.7 Expression energy

MEDULLA OBLONGATA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

129.3
Sample id Sample description nTPM
Area postrema
nTPM: 96.3
2054 Male, age 76, both hemispheres 100.5
2799 Male, age 61, both hemispheres 100.4
2306 Male, age 80, both hemispheres 88.0
Dorsal medullary reticular nucleus
nTPM: 95.7
2040 Female, age 85, both hemispheres 108.4
2088 Male, age 76, both hemispheres 95.7
2373 Male, age 61, both hemispheres 83.0
Dorsal motor vagal complex
nTPM: 76.7
2185 Male, age 76, both hemispheres 100.1
2000 Male, age 74, unknown 83.2
2133 Female, age 91, both hemispheres 79.9
2813 Female, age 72, unknown 79.2
2797 Male, age 61, both hemispheres 73.0
2807 Female, age 85, both hemispheres 72.8
2844 Male, age 55, unknown 68.6
2643 Male, age 74, both hemispheres 56.4
Gigantocellular reticular nuclei, medullary
nTPM: 102.5
2387 Female, age 91, both hemispheres 128.3
1876 Female, age 85, both hemispheres 123.2
2314 Male, age 61, both hemispheres 110.7
2022 Male, age 76, right hemisphere 98.7
2310 Male, age 80, both hemispheres 87.5
2462 Male, age 74, both hemispheres 66.7
Gigantocellular reticular nuclei, pars
nTPM: 82.6
2336 Male, age 61, both hemispheres 95.3
2706 Male, age 80, both hemispheres 88.1
2330 Male, age 80, both hemispheres 87.6
2084 Female, age 85, both hemispheres 81.1
2168 Male, age 76, both hemispheres 60.8
Inferior olive
nTPM: 96.4
2178 Male, age 61, both hemispheres 101.5
2379 Male, age 80, both hemispheres 100.3
2563 Male, age 74, both hemispheres 96.5
2085 Female, age 85, both hemispheres 94.3
2628 Female, age 91, both hemispheres 89.4
Lateral medullary reticular nucleus
nTPM: 104.2
2305 Male, age 74, both hemispheres 136.4
2852 Male, age 80, both hemispheres 110.0
2190 Female, age 85, both hemispheres 105.9
2044 Male, age 76, both hemispheres 93.9
2374 Male, age 61, both hemispheres 91.7
2804 Female, age 91, both hemispheres 87.2
Medial olivary nucleus
nTPM: 108.8
1943 Male, age 61, both hemispheres 117.7
1962 Male, age 76, both hemispheres 113.2
2851 Male, age 80, both hemispheres 107.2
2138 Female, age 91, both hemispheres 97.1
Medial vestibular nucleus
nTPM: 97.6
2801 Male, age 74, both hemispheres 121.8
2624 Male, age 61, both hemispheres 105.7
2803 Female, age 91, both hemispheres 101.7
2093 Male, age 80, both hemispheres 90.8
2134 Male, age 76, both hemispheres 84.5
2743 Female, age 85, both hemispheres 81.3
Motor hypoglossal nucleus
nTPM: 101.7
2182 Male, age 80, both hemispheres 108.7
2125 Female, age 91, both hemispheres 102.8
2461 Male, age 61, both hemispheres 101.6
2132 Female, age 85, both hemispheres 99.8
2277 Male, age 76, both hemispheres 95.6
Nucleus ambiguus
nTPM: 78.5
2071 Male, age 76, both hemispheres 105.3
2096 Female, age 85, both hemispheres 51.7
Nucleus cuneatus
nTPM: 95.5
2380 Male, age 80, both hemispheres 126.5
2808 Female, age 85, both hemispheres 115.6
2381 Male, age 80, both hemispheres 110.2
2376 Male, age 61, both hemispheres 103.9
2100 Male, age 76, both hemispheres 86.5
2564 Male, age 74, both hemispheres 86.0
2562 Male, age 61, both hemispheres 83.9
2131 Male, age 76, both hemispheres 83.8
2805 Female, age 91, both hemispheres 63.6
Nucleus gracilis
nTPM: 94.7
2382 Male, age 80, both hemispheres 114.6
2627 Male, age 74, both hemispheres 94.4
2299 Female, age 85, both hemispheres 75.1
Nucleus raphe obscurus
nTPM: 129.3
2845 Female, age 85, midline 158.1
2142 Male, age 76, midline 122.7
2800 Male, age 61, midline 107.0
Nucleus raphe pallidus
nTPM: 124.5
2183 Male, age 80, midline 126.9
1924 Male, age 61, midline 123.5
2145 Male, age 76, midline 123.1
Nucleus tractus solitarii
nTPM: 78.8
2656 Male, age 76, both hemispheres 105.7
2144 Female, age 91, right hemisphere 92.8
2307 Male, age 80, both hemispheres 59.4
2191 Female, age 85, both hemispheres 57.2
Parvicellular reticular nuclei
nTPM: 92.7
2119 Male, age 80, both hemispheres 118.1
2095 Male, age 76, both hemispheres 85.1
2558 Male, age 74, both hemispheres 74.9
Parvicellular reticular nuclei, medullary
nTPM: 84.0
2189 Female, age 91, both hemispheres 92.4
2091 Female, age 85, both hemispheres 85.5
2181 Male, age 80, left hemisphere 74.0
Peritrigeminal nucleus
nTPM: 97.6
2179 Male, age 61, both hemispheres 103.1
2067 Female, age 85, both hemispheres 96.2
2136 Male, age 76, both hemispheres 93.4
Prepositus hypoglossal nucleus
nTPM: 108.2
2855 Female, age 85, right hemisphere 139.8
2086 Male, age 80, both hemispheres 76.6
Spinal trigeminal nucleus, caudal
nTPM: 88.8
2390 Female, age 91, both hemispheres 101.3
2312 Male, age 61, both hemispheres 94.6
2308 Male, age 80, both hemispheres 88.0
2447 Male, age 76, both hemispheres 85.9
2642 Male, age 74, both hemispheres 74.2
Spinal trigeminal nucleus, interpolar
nTPM: 94.5
2625 Male, age 61, both hemispheres 107.1
2033 Male, age 80, both hemispheres 103.9
2389 Female, age 91, both hemispheres 95.1
2386 Female, age 85, both hemispheres 86.0
2066 Male, age 76, right hemisphere 80.3
Spinal vestibular nucleus
nTPM: 92.2
2806 Female, age 85, both hemispheres 109.1
2748 Male, age 76, both hemispheres 91.4
2186 Female, age 91, both hemispheres 89.6
2384 Male, age 74, both hemispheres 89.1
2796 Male, age 61, both hemispheres 88.7
2780 Male, age 80, both hemispheres 85.4
Superior vestibular nucleus
nTPM: 92.7
2015 Male, age 80, both hemispheres 101.8
2383 Male, age 74, both hemispheres 94.5
2061 Male, age 76, both hemispheres 81.7
Ventral medullary reticular nucleus
nTPM: 94.7
2372 Male, age 61, both hemispheres 98.2
2060 Male, age 76, both hemispheres 91.3
Ventrolateral medulla, A1-C1 cell groups
nTPM: 95.7
2118 Male, age 80, both hemispheres 105.2
2180 Male, age 61, both hemispheres 104.6
1986 Male, age 76, both hemispheres 97.1
2741 Female, age 85, both hemispheres 88.1
2302 Female, age 91, both hemispheres 83.6

MEDULLA OBLONGATA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

204.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Medulla oblongata
Scaled Tags Per Million: 204.0
FF:10174-103C3 60 years, female 222.7
FF:10038-101F2 18-64 years, mixed 213.1
FF:10155-103A2 76 years, female 176.2

MEDULLA OBLONGATA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

99.8
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 99.8
Samples: 4

Max nTPM: 125.1
Min nTPM: 76.0
Sample A Female 96.9
Sample B Female 76.0
Sample C Male 101.2
Sample D Male 125.1

MEDULLA OBLONGATA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

3.7
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 3.7
71610865 Antisense, RP_050927_02_A05, Mouse strain C57BL/6J (56 days, male) 3.7
74273118 Antisense, RP_050927_02_A05, Mouse strain C57BL/6J (56 days, male) 2.3

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