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  • CLK1
TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:66.0 nTPM
HPA Brain:31.2 nTPM
GTEx:66.0 nTPM
FANTOM5:176.7 Scaled Tags Per Million
Pig:82.3 nTPM
Mouse:17.1 nTPM

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

31.2
Sample id Sample description nTPM
Amygdala
nTPM: 31.2
2514 Male, age 75, right hemisphere 34.8
2695 Female, age 67, right hemisphere 34.6
1987 Female, age 91, left hemisphere 33.9
2814 Male, age 76, right hemisphere 27.1
2517 Female, age 94, left hemisphere 25.4
Basal amygdala
nTPM: 24.8
2609 Male, age 75, right hemisphere 29.1
2827 Female, age 67, right hemisphere 27.6
2110 Male, age 80, left hemisphere 27.0
2243 Female, age 91, right hemisphere 23.1
2685 Female, age 94, left hemisphere 21.0
1955 Male, age 76, both hemispheres 20.9
Central amygdala
nTPM: 23.5
2515 Male, age 75, right hemisphere 27.2
2701 Female, age 91, right hemisphere 26.3
2239 Male, age 80, left hemisphere 24.3
2826 Female, age 94, left hemisphere 20.9
1905 Male, age 76, both hemispheres 18.6
Corticomedial amygdala
nTPM: 23.1
2428 Male, age 75, right hemisphere 24.8
2429 Female, age 94, left hemisphere 24.8
2240 Male, age 76, both hemispheres 24.3
2535 Female, age 67, right hemisphere 24.2
2829 Male, age 80, left hemisphere 20.4
2242 Female, age 91, right hemisphere 20.2
Lateral amygdala
nTPM: 24.5
2830 Female, age 67, right hemisphere 29.0
2516 Male, age 75, right hemisphere 27.6
2255 Female, age 91, right hemisphere 25.9
2256 Male, age 80, left hemisphere 23.1
2534 Female, age 94, left hemisphere 22.4
1883 Male, age 76, both hemispheres 19.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

66.0
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 66.0
Samples: 152

Max nTPM: 179.7
Min nTPM: 10.7
Std nTPM: 31.2
Median nTPM: 61.3
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 179.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 158.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 158.4
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 148.0
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 130.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 129.8
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 126.1
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 125.8
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 123.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 122.1
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 122.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 116.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 114.9
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 112.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 111.6
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 109.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 107.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 102.3
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 100.6
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 97.5
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 97.2
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 96.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 96.6
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 96.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 94.8
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 93.5
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 93.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 92.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 92.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 90.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 89.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 89.7
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 88.3
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 87.3
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 86.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 86.2
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 85.7
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 85.7
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 84.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 84.0
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 83.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 83.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 82.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 82.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 81.5
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 80.9
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 79.0
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 78.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 77.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 77.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 74.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 72.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 72.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 71.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 71.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 70.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 70.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 69.6
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 69.5
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 69.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 69.1
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 68.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 68.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 67.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 67.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 67.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 66.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 66.3
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 65.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 64.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 63.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 63.1
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 62.6
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 61.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 61.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 61.4
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 61.3
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 60.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 59.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 57.9
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 57.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 57.1
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 56.5
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 56.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 55.1
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 54.8
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 53.6
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 51.9
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 50.3
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 50.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 50.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 49.4
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 49.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 49.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 48.4
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 48.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 48.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 47.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 47.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 47.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 47.5
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 47.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 47.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 47.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 47.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 47.0
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 46.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 46.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 46.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 46.0
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 45.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 45.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 45.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 44.9
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 44.7
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 44.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 43.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 43.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 43.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 43.0
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 42.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 41.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 40.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 40.6
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 40.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 40.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 39.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 39.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 39.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 38.8
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 38.7
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 37.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 35.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 35.1
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 33.0
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 32.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 31.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 28.3
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 28.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 27.5
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 27.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 26.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 26.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 25.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 25.2
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 24.4
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 22.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 19.9
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 18.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 16.8
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 11.8
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 10.7
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

176.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 176.7
FF:10151-102I7 76 years, female 176.7

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

82.3
Pig sample Sample description nTPM
Amygdala
nTPM: 82.3
Samples: 4

Max nTPM: 92.4
Min nTPM: 67.1
Sample A Female 67.1
Sample B Female 92.4
Sample C Male 88.6
Sample D Male 81.2

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

17.1
Mouse sample Sample description nTPM
Amygdala
nTPM: 17.1
Samples: 4

Max nTPM: 26.3
Min nTPM: 10.5
Sample A Male 17.1
Sample B Male 26.3
Sample C Female 10.5
Sample D Female 14.3

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