MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:90.9 nTPM
HPA Brain:32.0 nTPM
GTEx:90.9 nTPM
FANTOM5:353.0 Scaled Tags Per Million
Pig:79.7 nTPM
Mouse:28.0 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 32.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 28.0
2411 Female, age 72, unknown 33.0
2219 Male, age 76, both hemispheres 32.6
1870 Female, age 42, unknown 31.9
2828 Female, age 72, unknown 31.6
1830 Male, age 51, unknown 28.8
1833 Male, age 53, unknown 27.9
2019 Male, age 18, unknown 27.3
2666 Male, age 74, left hemisphere 26.3
1827 Male, age 72, unknown 26.2
2586 Male, age 75, left hemisphere 14.1
Dorsal raphe nucleus
nTPM: 29.7
2016 Female, age 72, unknown 38.1
2298 Female, age 72, unknown 31.9
2750 Male, age 76, both hemispheres 27.0
1828 Male, age 53, unknown 26.1
2047 Male, age 72, unknown 25.3
Inferior colliculus
nTPM: 27.3
2097 Female, age 72, unknown 30.8
1890 Male, age 53, unknown 29.6
1848 Female, age 42, unknown 24.5
2849 Male, age 72, unknown 24.4
Median raphe nucleus
nTPM: 32.0
2220 Male, age 76, midline 32.0
Periaquaductal grey, anterior
nTPM: 26.5
1947 Male, age 18, unknown 28.4
1795 Male, age 51, unknown 28.0
2502 Female, age 75, unknown 23.0
Periaquaductal grey, dorsal
nTPM: 29.0
1831 Male, age 72, unknown 31.9
2464 Female, age 72, unknown 30.6
1840 Male, age 53, unknown 27.1
2850 Male, age 76, both hemispheres 26.2
Periaquaductal grey, lateral
nTPM: 30.0
2272 Male, age 74, both hemispheres 32.0
2053 Male, age 18, unknown 29.7
2140 Male, age 76, both hemispheres 28.3
Pretectal area
nTPM: 26.8
2273 Male, age 74, both hemispheres 41.1
2224 Female, age 72, unknown 28.9
2667 Female, age 75, unknown 28.8
2825 Male, age 18, unknown 28.6
1815 Male, age 53, unknown 26.1
2007 Male, age 72, unknown 25.3
1944 Female, age 72, unknown 25.2
2316 Male, age 76, right hemisphere 24.2
1816 Male, age 51, unknown 22.6
1817 Female, age 42, unknown 22.5
2407 Male, age 75, both hemispheres 21.3
Red nucleus
nTPM: 28.0
2503 Female, age 72, unknown 35.4
1865 Male, age 51, unknown 32.5
1904 Male, age 53, unknown 32.1
1821 Female, age 72, unknown 30.4
2227 Male, age 72, unknown 28.1
2769 Male, age 72, unknown 28.1
2823 Male, age 76, right hemisphere 27.7
2785 Male, age 18, unknown 26.9
1954 Female, age 42, unknown 26.2
2588 Male, age 74, left hemisphere 25.5
2725 Female, age 75, unknown 24.6
2584 Male, age 75, left hemisphere 19.1
Substantia nigra
nTPM: 26.6
2409 Female, age 72, unknown 37.2
2590 Female, age 75, unknown 31.0
2699 Male, age 18, unknown 30.6
2583 Male, age 75, right hemisphere 26.3
2665 Male, age 74, both hemispheres 25.8
1851 Male, age 51, unknown 25.1
2241 Male, age 72, unknown 25.1
1889 Female, age 72, unknown 23.5
1941 Male, age 53, unknown 21.7
1916 Female, age 42, unknown 20.2
Superior colliculus
nTPM: 28.5
1913 Female, age 42, unknown 47.9
1995 Male, age 72, unknown 35.3
2587 Male, age 74, left hemisphere 31.8
1796 Male, age 53, unknown 28.5
2668 Female, age 75, unknown 27.4
1839 Male, age 51, unknown 27.1
2087 Female, age 72, unknown 26.5
1895 Male, age 76, right hemisphere 26.0
2261 Male, age 18, unknown 20.9
2664 Male, age 75, both hemispheres 14.0
Ventral tegmental area
nTPM: 25.9
2410 Female, age 72, unknown 29.1
2021 Male, age 53, unknown 28.1
1915 Female, age 42, unknown 26.2
2223 Female, age 72, unknown 24.3
1942 Male, age 51, unknown 24.2
2218 Male, age 76, both hemispheres 23.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 90.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 90.9
Samples: 139

Max nTPM: 328.8
Min nTPM: 8.7
Std nTPM: 58.0
Median nTPM: 76.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 328.8
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 311.9
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 289.6
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 286.3
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 277.3
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 254.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 253.6
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 224.9
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 221.0
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 184.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 158.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 353.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 353.0
FF:10158-103A5 76 years, female 353.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 79.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 77.3
Samples: 4

Max nTPM: 95.3
Min nTPM: 64.1
Sample A Female 64.1
Sample B Female 80.6
Sample C Male 69.2
Sample D Male 95.3
Midbrain
nTPM: 76.3
Samples: 4

Max nTPM: 81.0
Min nTPM: 71.0
Sample A Female 72.5
Sample B Female 81.0
Sample C Male 71.0
Sample D Male 80.6
Periaqueductal gray
nTPM: 79.7
Samples: 3

Max nTPM: 94.8
Min nTPM: 68.2
Sample B Female 76.1
Sample C Male 68.2
Sample D Male 94.8
Superior colliculi
nTPM: 69.2
Samples: 4

Max nTPM: 79.1
Min nTPM: 51.7
Sample A Female 51.7
Sample B Female 79.1
Sample C Male 68.9
Sample D Male 77.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 28.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 28.0
Samples: 4

Max nTPM: 35.9
Min nTPM: 20.5
Sample A Male 33.2
Sample B Male 35.9
Sample C Female 20.5
Sample D Female 22.5

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