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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
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Retina
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:217.0 nTPM
GTEx:217.0 nTPM
FANTOM5:186.3 Scaled Tags Per Million
Pig:150.6 nTPM
Mouse:430.0 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

217.0
GTEx sample id Sample description nTPM
Retina
Average nTPM: 217.0
Samples: 105

Max nTPM: 370.7
Min nTPM: 98.7
Std nTPM: 55.6
Median nTPM:
149_1 88 years, male 370.7
81_1 67 years, male 344.3
415_1 77 years, female 344.0
32_1 67 years, male 334.3
162_1 79 years, female 326.8
466_1 57 years, female 324.2
126_1 63 years, male 318.3
490_1 67 years, female 311.3
89_1 63 years, male 305.1
43_1 64 years, female 300.0
495_1 57 years, female 299.4
491_1 89 years, female 291.9
139_1 64 years, female 277.5
468_1 89 years, male 276.5
217_1 76 years, male 273.7
18_1 88 years, male 272.7
115_1 83 years, male 271.3
35_1 74 years, female 269.4
142_1 61 years, female 269.4
413_1 59 years, female 267.4
117_1 61 years, male 266.8
2_1 77 years, female 266.6
324_1 76 years, male 262.5
17_1 71 years, male 262.4
315_1 62 years, female 258.5
145_1 84 years, male 257.5
153_1 70 years, female 256.2
9_1 66 years, female 256.1
518_1 75 years, female 254.3
6_1 73 years, female 249.5
414_1 84 years, female 248.8
137_1 83 years, male 242.8
526_1 61 years, male 241.8
501_1 88 years, male 241.6
109_1 81 years, female 241.1
311_1 78 years, male 240.3
308_1 70 years, female 237.3
307_1 66 years, female 235.1
254_1 77 years, female 234.0
499_1 55 years, female 231.5
265_1 87 years, male 230.9
251_1 78 years, male 230.7
246_1 77 years, male 226.2
348_1 84 years, male 225.9
288_1 66 years, female 225.2
42_1 85 years, male 224.5
4_1 88 years, female 219.3
313_1 79 years, female 216.2
292_1 71 years, male 214.1
293_1 68 years, female 210.3
316_1 62 years, male 210.2
119_1 70 years, female 209.2
120_1 70 years, female 208.5
503_1 68 years, male 208.5
266_1 85 years, male 207.7
517_1 88 years, male 205.1
291_1 76 years, male 204.2
447_1 81 years, male 202.2
314_1 67 years, male 201.7
396_1 62 years, male 200.7
480_1 63 years, male 199.9
41_1 94 years, female 198.6
322_1 76 years, male 198.1
229_1 69 years, female 197.1
99_1 64 years, male 193.0
425_1 59 years, female 192.7
335_1 73 years, female 190.5
189_1 76 years, male 190.4
405_1 91 years, male 186.6
320_1 89 years, female 186.4
389_1 86 years, female 184.7
319_1 81 years, male 182.9
321_1 62 years, female 181.0
243_1 75 years, male 180.2
377_1 82 years, female 176.7
286_1 68 years, female 175.2
386_1 76 years, male 171.8
384_1 83 years, male 171.2
352_1 62 years, male 169.5
406_1 79 years, male 169.0
177_1 74 years, male 168.5
376_1 75 years, female 166.0
355_1 70 years, female 163.2
349_1 83 years, male 161.9
394_1 75 years, female 161.7
375_1 74 years, female 161.4
404_1 82 years, female 160.1
172_1 72 years, female 159.5
318_1 68 years, male 159.2
317_1 60 years, male 156.7
347_1 72 years, male 156.2
351_1 91 years, male 156.1
506_1 65 years, male 155.3
237_1 82 years, male 154.2
350_1 84 years, female 152.3
264_1 73 years, female 148.3
163_1 78 years, male 147.9
295_1 61 years, female 147.2
353_1 82 years, female 147.1
354_1 81 years, female 143.6
379_1 60 years, male 142.7
173_1 67 years, male 141.8
452_1 88 years, female 133.4
356_1 87 years, female 132.9
218_1 71 years, female 98.7
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

186.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 186.3
FF:10030-101E3 24-65 years, mixed 186.3

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

150.6
Pig sample Sample description nTPM
Retina
nTPM: 150.6
Samples: 4

Max nTPM: 155.7
Min nTPM: 147.5
Sample A Female 147.8
Sample B Female 151.4
Sample C Male 147.5
Sample D Male 155.7

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

430.0
Mouse sample Sample description nTPM
Retina
nTPM: 430.0
Samples: 4

Max nTPM: 446.2
Min nTPM: 413.0
Sample A Male 446.2
Sample B Male 428.4
Sample C Female 413.0
Sample D Female 432.3

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