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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
201.6
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 142.3
1984
Male, age 76, both hemispheres
199.8
2301
Female, age 85, both hemispheres
133.9
2188
Female, age 91, both hemispheres
118.1
2090
Male, age 80, both hemispheres
117.3
Dorsal cochlear nucleus nTPM: 134.4
2802
Male, age 74, right hemisphere
168.2
2187
Female, age 91, both hemispheres
130.9
2370
Male, age 61, both hemispheres
129.7
2378
Male, age 80, both hemispheres
125.8
2058
Male, age 76, both hemispheres
117.5
Dorsal tegmental nucleus nTPM: 124.6
2083
Male, age 80, both hemispheres
156.2
2326
Male, age 74, both hemispheres
134.9
1936
Male, age 76, left hemisphere
123.2
2358
Male, age 61, both hemispheres
84.3
Dorsolateral tegmental area nTPM: 146.3
2751
Female, age 85, both hemispheres
175.2
2141
Male, age 76, both hemispheres
164.4
2360
Male, age 74, both hemispheres
160.7
2654
Male, age 80, both hemispheres
154.8
2337
Male, age 61, both hemispheres
76.3
Kolliker-Fuse nucleus nTPM: 134.1
2315
Male, age 76, right hemisphere
177.5
2163
Male, age 80, both hemispheres
140.0
2793
Female, age 91, left hemisphere
84.7
Lateral lemniscal nuclei nTPM: 128.6
2169
Male, age 76, both hemispheres
201.6
2746
Female, age 85, left hemisphere
134.1
2036
Male, age 80, both hemispheres
129.9
2453
Male, age 74, right hemisphere
99.8
2320
Female, age 91, left hemisphere
77.8
Lateral parabrachial nucleus nTPM: 144.1
2139
Female, age 85, right hemisphere
229.8
2013
Male, age 80, both hemispheres
150.1
2792
Male, age 76, both hemispheres
108.4
2790
Male, age 61, both hemispheres
87.8
Lateral vestibular nucleus nTPM: 131.3
2311
Male, age 80, both hemispheres
134.5
2184
Male, age 76, both hemispheres
128.1
Locus coeruleus nTPM: 181.6
2014
Male, age 55, unknown
233.6
2788
Male, age 74, unknown
222.3
2123
Female, age 91, both hemispheres
206.5
2317
Female, age 72, unknown
176.3
1980
Male, age 76, both hemispheres
172.5
2162
Male, age 80, both hemispheres
137.4
2720
Male, age 74, both hemispheres
122.8
Medial parabrachial nucleus nTPM: 135.9
2463
Female, age 85, right hemisphere
166.5
2170
Female, age 91, both hemispheres
138.1
2854
Male, age 80, both hemispheres
137.2
2786
Male, age 76, both hemispheres
128.9
2156
Male, age 61, both hemispheres
108.5
Medial periolivary nuclei nTPM: 152.4
2791
Male, age 74, right hemisphere
212.4
2063
Male, age 76, both hemispheres
212.1
2171
Female, age 85, both hemispheres
160.4
2081
Male, age 80, both hemispheres
89.6
2458
Female, age 91, both hemispheres
87.3
Motor facial nucleus nTPM: 149.6
2062
Male, age 76, both hemispheres
204.7
2795
Female, age 91, both hemispheres
176.8
2365
Male, age 74, right hemisphere
159.6
2126
Male, age 61, both hemispheres
129.9
2697
Female, age 85, both hemispheres
114.8
2327
Male, age 80, both hemispheres
111.6
Motor trigeminal nucleus nTPM: 106.7
2309
Male, age 76, both hemispheres
133.1
2335
Male, age 61, both hemispheres
121.1
2079
Male, age 80, both hemispheres
119.7
2560
Male, age 74, both hemispheres
83.6
2321
Female, age 91, both hemispheres
76.1
Nuclei of the trapezoid body nTPM: 159.5
2159
Male, age 61, both hemispheres
202.3
1983
Male, age 76, both hemispheres
179.5
2735
Female, age 85, both hemispheres
167.0
2368
Female, age 91, both hemispheres
128.9
2166
Male, age 80, both hemispheres
119.6
Nucleus raphe magnus nTPM: 147.9
2160
Male, age 61, both hemispheres
201.9
2455
Male, age 74, both hemispheres
191.8
2051
Male, age 76, both hemispheres
141.6
2172
Female, age 85, both hemispheres
139.6
2328
Male, age 80, both hemispheres
122.5
2459
Female, age 91, both hemispheres
90.2
Paramedian reticular nucleus nTPM: 168.2
2050
Female, age 85, both hemispheres
178.0
2057
Male, age 80, both hemispheres
177.3
2313
Male, age 61, both hemispheres
175.3
2052
Male, age 76, both hemispheres
142.3
Pedunculopontine tegmental nucleus nTPM: 157.5
1921
Female, age 85, both hemispheres
196.3
2334
Male, age 80, both hemispheres
161.6
2338
Male, age 61, both hemispheres
114.6
Pontine nuclei nTPM: 135.1
1863
Male, age 55, unknown
197.0
2727
Male, age 61, right hemisphere
163.2
1968
Male, age 76, left hemisphere
158.7
2109
Female, age 72, unknown
148.5
2787
Female, age 85, both hemispheres
146.7
2319
Female, age 91, both hemispheres
94.4
2115
Male, age 80, left hemisphere
93.3
2454
Male, age 74, left hemisphere
79.1
Pontine raphe nucleus nTPM: 201.6
2853
Male, age 76, midline
221.1
2122
Female, age 85, midline
182.2
Posteroventral cochlear nucleus nTPM: 127.4
2752
Female, age 85, both hemispheres
170.4
2070
Male, age 76, both hemispheres
137.7
2371
Male, age 61, both hemispheres
116.3
2341
Male, age 80, both hemispheres
113.1
2135
Female, age 91, both hemispheres
99.8
Principal sensory trigeminal nucleus nTPM: 129.2
2158
Male, age 61, both hemispheres
182.4
2008
Male, age 80, left hemisphere
135.5
2324
Male, age 76, both hemispheres
123.0
2367
Female, age 91, left hemisphere
75.7
Reticular pontine nucleus, caudal nTPM: 112.1
2092
Male, age 76, both hemispheres
172.2
2332
Male, age 80, right hemisphere
110.1
2457
Female, age 91, both hemispheres
83.5
2559
Male, age 74, both hemispheres
82.4
Reticular pontine nucleus, oral nTPM: 132.0
2012
Female, age 85, both hemispheres
171.6
1939
Male, age 80, both hemispheres
165.5
2167
Male, age 76, both hemispheres
150.3
2366
Female, age 91, both hemispheres
92.0
2361
Male, age 74, both hemispheres
80.6
Reticulotegmental nucleus nTPM: 135.9
2325
Male, age 76, both hemispheres
172.9
2333
Male, age 80, both hemispheres
134.6
2322
Female, age 91, both hemispheres
128.1
2452
Male, age 74, both hemispheres
108.1
Spinal trigeminal nucleus, oral nTPM: 142.6
2737
Female, age 85, both hemispheres
166.4
1978
Male, age 76, both hemispheres
150.6
2164
Male, age 80, both hemispheres
110.7
Subcoeruleus area nTPM: 144.4
1958
Male, age 80, both hemispheres
163.4
2369
Female, age 85, left hemisphere
154.6
2323
Female, age 91, left hemisphere
148.2
2089
Male, age 76, left hemisphere
141.5
2451
Male, age 74, both hemispheres
114.3
Superior olive nTPM: 146.1
2364
Male, age 74, right hemisphere
207.2
2020
Male, age 76, both hemispheres
162.3
1875
Female, age 85, both hemispheres
161.0
2329
Male, age 80, right hemisphere
111.0
2561
Female, age 91, both hemispheres
89.2
Ventral periolivary nuclei nTPM: 152.7
2130
Female, age 85, both hemispheres
198.5
2023
Male, age 76, both hemispheres
166.9
2165
Male, age 80, both hemispheres
159.0
2794
Female, age 91, left hemisphere
86.2
Ventrolateral tegmental area, A5 NE cell group nTPM: 127.9
1959
Male, age 76, both hemispheres
158.7
2840
Female, age 85, both hemispheres
145.0
2449
Male, age 74, both hemispheres
132.1
2161
Male, age 80, both hemispheres
119.3
2359
Male, age 61, both hemispheres
117.7
2456
Female, age 91, both hemispheres
94.9
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
373.5
Pig sample
Sample description
nTPM
Pons nTPM: 373.5
Samples: 4
Max nTPM: 404.3
Min nTPM: 355.0
Sample A
Female
375.7
Sample B
Female
355.0
Sample C
Male
358.8
Sample D
Male
404.3
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
