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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:93.3 nTPM
HPA Brain:505.6 nTPM
GTEx:93.3 nTPM
FANTOM5:1214.0 Scaled Tags Per Million
Pig:755.5 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

505.6
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 481.2
2048 Male, age 55, midline 586.6
1981 Female, age 72, midline 527.5
2565 Male, age 75, midline 498.9
2194 Female, age 79, both hemispheres 417.7
2816 Male, age 47, midline 375.3
Cervical spinal cord, dorsal horn
nTPM: 446.6
2721 Male, age 90, both hemispheres 646.4
2297 Male, age 75, both hemispheres 462.8
2173 Female, age 72, unknown 461.5
1877 Male, age 55, unknown 415.6
2069 Male, age 47, both hemispheres 394.9
2296 Male, age 66, both hemispheres 298.6
Cervical spinal cord, ventral horn
nTPM: 505.6
2295 Male, age 66, both hemispheres 638.0
2809 Male, age 90, both hemispheres 611.5
2098 Female, age 72, unknown 573.1
2820 Female, age 79, both hemispheres 431.1
2068 Male, age 55, unknown 393.0
2480 Male, age 75, both hemispheres 386.9

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

93.3
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 93.3
Samples: 159

Max nTPM: 258.6
Min nTPM: 13.8
Std nTPM: 48.4
Median nTPM: 85.6
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 258.6
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 239.5
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 232.1
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 222.8
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 206.1
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 194.9
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 187.6
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 187.1
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 186.6
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 176.2
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 159.9
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 159.9
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 159.3
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 156.9
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 156.7
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 156.5
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 155.0
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 152.5
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 152.2
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 151.2
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 150.4
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 149.9
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 148.7
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 148.0
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 147.7
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 143.2
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 141.4
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 140.9
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 140.6
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 139.9
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 139.7
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 137.9
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 134.5
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 134.2
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 132.4
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 131.4
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 130.8
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 127.3
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 125.0
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 124.5
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 121.7
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 121.7
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 121.2
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 121.1
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 120.6
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 116.3
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 116.2
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 116.1
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 112.8
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 112.2
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 110.4
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 110.3
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 105.8
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 105.0
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 104.4
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 104.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 101.6
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 99.6
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 99.4
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 98.4
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 98.4
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 97.9
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 97.0
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 96.9
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 96.3
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 94.4
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 92.6
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 92.3
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 92.0
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 91.8
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 91.5
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 90.6
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 90.2
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 90.2
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 90.0
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 90.0
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 86.6
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 86.6
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 85.7
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 85.6
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 85.2
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 83.0
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 82.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 81.8
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 81.5
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 81.3
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 80.8
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 79.5
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 78.7
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 78.0
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 77.7
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 77.2
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 76.7
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 76.4
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 75.8
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 75.3
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 74.7
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 74.4
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 73.6
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 72.6
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 71.6
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 70.1
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 69.5
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 69.5
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 69.0
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 68.0
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 68.0
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 65.0
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 64.8
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 63.3
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 61.4
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 61.0
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 61.0
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 60.9
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 60.9
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 59.6
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 58.0
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 57.5
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 57.4
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 54.8
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 54.6
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 53.6
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 53.0
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 52.9
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 52.2
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 51.6
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 51.3
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 49.2
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 49.1
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 49.0
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 48.7
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 47.4
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 47.3
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 45.8
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 45.5
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 45.2
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 45.2
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 44.7
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 42.2
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 41.7
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 41.5
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 40.9
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 39.9
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 37.1
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 37.1
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 34.7
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 34.3
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 33.4
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 30.9
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 29.3
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 28.2
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 28.1
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 24.1
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 22.3
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 22.0
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 20.7
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 19.5
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 13.9
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 13.8
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1214.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 1214.0
FF:10181-103D1 60 years, female 1532.5
FF:10159-103A6 76 years, female 895.5

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

755.5
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 455.2
Samples: 4

Max nTPM: 534.0
Min nTPM: 336.5
Sample A Female 462.3
Sample B Female 336.5
Sample C Male 487.9
Sample D Male 534.0
Ventral spinal cord
nTPM: 755.5
Samples: 4

Max nTPM: 934.3
Min nTPM: 485.7
Sample A Female 755.1
Sample B Female 846.8
Sample C Male 934.3
Sample D Male 485.7

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