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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:48.0 nTPM
HPA Brain:96.6 nTPM
GTEx:48.0 nTPM
FANTOM5:102.1 Scaled Tags Per Million
Pig:71.6 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

96.6
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 79.9
2194 Female, age 79, both hemispheres 92.2
2816 Male, age 47, midline 87.8
1981 Female, age 72, midline 84.6
2048 Male, age 55, midline 72.1
2565 Male, age 75, midline 62.6
Cervical spinal cord, dorsal horn
nTPM: 85.8
2296 Male, age 66, both hemispheres 106.5
2173 Female, age 72, unknown 103.5
1877 Male, age 55, unknown 85.5
2069 Male, age 47, both hemispheres 81.1
2721 Male, age 90, both hemispheres 73.7
2297 Male, age 75, both hemispheres 64.2
Cervical spinal cord, ventral horn
nTPM: 96.6
2068 Male, age 55, unknown 124.5
2820 Female, age 79, both hemispheres 114.3
2809 Male, age 90, both hemispheres 90.4
2098 Female, age 72, unknown 84.6
2480 Male, age 75, both hemispheres 83.5
2295 Male, age 66, both hemispheres 82.6

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

48.0
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 48.0
Samples: 159

Max nTPM: 111.8
Min nTPM: 15.0
Std nTPM: 18.4
Median nTPM: 47.4
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 111.8
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 108.6
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 97.3
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 95.5
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 83.6
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 81.9
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 79.1
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 78.6
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 78.6
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 76.3
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 75.2
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 74.9
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 74.6
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 74.0
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 73.9
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 73.8
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 73.8
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 71.5
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 71.5
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 71.2
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 70.8
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 70.0
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 69.7
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 67.0
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 66.9
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 65.7
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 65.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 65.3
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 63.8
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 63.8
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 63.4
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 63.4
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 63.2
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 62.3
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 62.0
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 61.0
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 60.4
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 59.8
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 59.5
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 59.2
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 59.1
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 58.8
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 58.7
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 58.0
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 57.9
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 56.1
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 55.8
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 55.7
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 55.3
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 54.4
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 54.3
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 53.9
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 53.3
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 53.1
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 52.9
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 52.6
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 52.1
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 51.9
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 51.8
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 51.8
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 51.6
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 51.2
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 50.7
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 50.6
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 50.5
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 50.4
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 50.2
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 50.1
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 50.1
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 50.0
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 49.8
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 49.2
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 49.2
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 49.1
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 49.1
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 49.0
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 48.6
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 48.5
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 47.4
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 47.4
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 46.8
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 46.4
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 45.7
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 45.7
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 44.7
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 44.3
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 44.3
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 44.1
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 43.3
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 43.1
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 43.0
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 42.9
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 42.4
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 42.4
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 42.4
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 42.0
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 41.9
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 41.8
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 40.7
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 40.6
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 40.0
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 39.7
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 39.6
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 39.3
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 38.9
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 38.8
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 38.4
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 38.0
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 37.8
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 37.8
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 37.7
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 37.6
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 37.6
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 37.4
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 36.5
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 36.3
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 36.0
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 36.0
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 35.8
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 35.7
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 35.1
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 34.8
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 33.9
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 33.4
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 33.0
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 32.8
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 32.2
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 31.8
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 31.7
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 31.6
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 31.5
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 30.1
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 29.2
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 28.7
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 28.6
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 28.4
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 27.9
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 27.7
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 27.3
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 26.6
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 26.3
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 25.6
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 25.3
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 25.0
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 24.0
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 23.9
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 23.7
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 22.4
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 21.9
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 21.6
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 21.2
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 20.7
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 19.4
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 19.1
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 18.5
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 16.9
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 15.5
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 15.5
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 15.0
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

102.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 102.1
FF:10181-103D1 60 years, female 114.7
FF:10159-103A6 76 years, female 89.5

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

71.6
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 71.6
Samples: 4

Max nTPM: 75.3
Min nTPM: 68.3
Sample A Female 70.4
Sample B Female 72.4
Sample C Male 68.3
Sample D Male 75.3
Ventral spinal cord
nTPM: 70.1
Samples: 4

Max nTPM: 75.8
Min nTPM: 64.8
Sample A Female 75.8
Sample B Female 65.6
Sample C Male 64.8
Sample D Male 74.2

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