MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:579.0 nTPM
HPA Brain:520.1 nTPM
GTEx:579.0 nTPM
FANTOM5:2047.9 Scaled Tags Per Million
Pig:319.3 nTPM
Mouse:9.5 nTPM
Allen mouse:0.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 520.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 282.8
2666 Male, age 74, left hemisphere 409.3
1830 Male, age 51, unknown 386.7
2828 Female, age 72, unknown 354.0
1870 Female, age 42, unknown 309.2
1833 Male, age 53, unknown 297.4
2019 Male, age 18, unknown 272.1
2411 Female, age 72, unknown 247.8
1827 Male, age 72, unknown 218.5
2219 Male, age 76, both hemispheres 199.8
2586 Male, age 75, left hemisphere 133.4
Dorsal raphe nucleus
nTPM: 418.8
2016 Female, age 72, unknown 555.9
2298 Female, age 72, unknown 541.2
1828 Male, age 53, unknown 401.1
2750 Male, age 76, both hemispheres 309.7
2047 Male, age 72, unknown 286.0
Inferior colliculus
nTPM: 317.2
2097 Female, age 72, unknown 362.7
2849 Male, age 72, unknown 307.0
1890 Male, age 53, unknown 301.4
1848 Female, age 42, unknown 297.7
Median raphe nucleus
nTPM: 369.0
2220 Male, age 76, midline 369.0
Periaquaductal grey, anterior
nTPM: 284.4
1795 Male, age 51, unknown 358.1
2502 Female, age 75, unknown 265.3
1947 Male, age 18, unknown 229.8
Periaquaductal grey, dorsal
nTPM: 452.6
1831 Male, age 72, unknown 651.4
2850 Male, age 76, both hemispheres 527.0
1840 Male, age 53, unknown 331.7
2464 Female, age 72, unknown 300.5
Periaquaductal grey, lateral
nTPM: 520.1
2272 Male, age 74, both hemispheres 614.9
2140 Male, age 76, both hemispheres 479.9
2053 Male, age 18, unknown 465.5
Pretectal area
nTPM: 330.7
2224 Female, age 72, unknown 477.4
2407 Male, age 75, both hemispheres 448.4
2273 Male, age 74, both hemispheres 445.7
2316 Male, age 76, right hemisphere 431.1
2825 Male, age 18, unknown 305.7
1817 Female, age 42, unknown 290.9
2667 Female, age 75, unknown 289.8
1815 Male, age 53, unknown 284.3
1944 Female, age 72, unknown 275.0
2007 Male, age 72, unknown 259.3
1816 Male, age 51, unknown 130.5
Red nucleus
nTPM: 328.9
1865 Male, age 51, unknown 472.3
2503 Female, age 72, unknown 450.2
2725 Female, age 75, unknown 375.2
2227 Male, age 72, unknown 345.1
2823 Male, age 76, right hemisphere 340.5
2769 Male, age 72, unknown 339.6
1904 Male, age 53, unknown 336.1
2785 Male, age 18, unknown 333.9
1954 Female, age 42, unknown 299.5
1821 Female, age 72, unknown 298.6
2584 Male, age 75, left hemisphere 196.9
2588 Male, age 74, left hemisphere 158.8
Substantia nigra
nTPM: 489.1
2699 Male, age 18, unknown 1018.5
2665 Male, age 74, both hemispheres 663.1
2590 Female, age 75, unknown 630.3
1916 Female, age 42, unknown 449.3
1851 Male, age 51, unknown 423.9
1941 Male, age 53, unknown 413.6
2409 Female, age 72, unknown 380.8
2583 Male, age 75, right hemisphere 370.2
2241 Male, age 72, unknown 317.2
1889 Female, age 72, unknown 223.7
Superior colliculus
nTPM: 363.0
1913 Female, age 42, unknown 676.2
1995 Male, age 72, unknown 571.2
2587 Male, age 74, left hemisphere 520.7
2664 Male, age 75, both hemispheres 344.5
1839 Male, age 51, unknown 327.7
2087 Female, age 72, unknown 293.7
1796 Male, age 53, unknown 287.6
2668 Female, age 75, unknown 226.2
1895 Male, age 76, right hemisphere 193.4
2261 Male, age 18, unknown 188.9
Ventral tegmental area
nTPM: 483.7
2021 Male, age 53, unknown 754.9
1915 Female, age 42, unknown 488.0
2218 Male, age 76, both hemispheres 460.4
1942 Male, age 51, unknown 439.1
2410 Female, age 72, unknown 394.6
2223 Female, age 72, unknown 365.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 579.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 579.0
Samples: 139

Max nTPM: 2332.4
Min nTPM: 80.2
Std nTPM: 421.3
Median nTPM: 482.5
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 2332.4
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 2062.8
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 2009.0
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 1730.7
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 1539.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 1485.5
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 1482.9
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 1379.8
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 1299.8
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 1277.3
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 1273.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 2047.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 2047.9
FF:10158-103A5 76 years, female 2047.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 319.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 319.3
Samples: 4

Max nTPM: 480.6
Min nTPM: 192.1
Sample A Female 268.6
Sample B Female 480.6
Sample C Male 192.1
Sample D Male 335.9
Midbrain
nTPM: 223.5
Samples: 4

Max nTPM: 445.9
Min nTPM: 105.8
Sample A Female 445.9
Sample B Female 203.0
Sample C Male 139.1
Sample D Male 105.8
Periaqueductal gray
nTPM: 190.7
Samples: 3

Max nTPM: 244.9
Min nTPM: 144.6
Sample B Female 182.5
Sample C Male 244.9
Sample D Male 144.6
Superior colliculi
nTPM: 232.4
Samples: 4

Max nTPM: 248.1
Min nTPM: 202.4
Sample A Female 248.1
Sample B Female 235.8
Sample C Male 202.4
Sample D Male 243.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 9.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 9.5
Samples: 4

Max nTPM: 15.6
Min nTPM: 4.8
Sample A Male 15.6
Sample B Male 10.5
Sample C Female 4.8
Sample D Female 6.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.5
67979029 Antisense, RP_040923_02_A10, Mouse strain C57BL/6J (56 days, male) 0.5

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