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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
500.7
Sample id
Sample description
nTPM
Amygdala nTPM: 344.8
2814
Male, age 76, right hemisphere
586.3
2517
Female, age 94, left hemisphere
385.6
1987
Female, age 91, left hemisphere
360.0
2514
Male, age 75, right hemisphere
206.1
2695
Female, age 67, right hemisphere
186.0
Basal amygdala nTPM: 480.6
2685
Female, age 94, left hemisphere
676.1
2243
Female, age 91, right hemisphere
562.4
2110
Male, age 80, left hemisphere
528.6
1955
Male, age 76, both hemispheres
501.0
2827
Female, age 67, right hemisphere
344.1
2609
Male, age 75, right hemisphere
271.1
Central amygdala nTPM: 391.6
1905
Male, age 76, both hemispheres
585.6
2826
Female, age 94, left hemisphere
417.9
2701
Female, age 91, right hemisphere
365.6
2239
Male, age 80, left hemisphere
362.1
2515
Male, age 75, right hemisphere
226.8
Corticomedial amygdala nTPM: 500.7
2242
Female, age 91, right hemisphere
655.7
2829
Male, age 80, left hemisphere
635.0
2429
Female, age 94, left hemisphere
519.1
2240
Male, age 76, both hemispheres
483.0
2535
Female, age 67, right hemisphere
468.0
2428
Male, age 75, right hemisphere
243.1
Lateral amygdala nTPM: 331.4
2534
Female, age 94, left hemisphere
449.8
1883
Male, age 76, both hemispheres
441.4
2255
Female, age 91, right hemisphere
439.0
2256
Male, age 80, left hemisphere
294.7
2830
Female, age 67, right hemisphere
193.0
2516
Male, age 75, right hemisphere
170.8
AMYGDALA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
209.1
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 209.1
Samples: 152
Max nTPM: 572.3
Min nTPM: 12.3
Std nTPM: 110.6
Median nTPM: 192.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
572.3
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
538.2
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
504.7
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
464.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
458.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
443.6
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
438.0
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
421.9
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
407.9
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
400.1
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
399.5
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
399.3
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
391.0
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
371.6
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
371.3
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
370.1
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
367.8
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
363.3
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
339.5
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
338.1
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
337.5
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
334.9
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
333.9
GTEX-R55E-0011-R4A-SM-2TC5H
20-29 years, male
333.7
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
333.6
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
322.0
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
308.1
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
297.1
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
292.1
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
284.6
GTEX-NL3H-0011-R4a-SM-2I3GK
60-69 years, male
283.8
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
282.2
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
280.1
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
277.8
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
276.9
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
276.8
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
276.7
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
274.3
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
267.9
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
263.9
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
262.6
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
259.9
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
257.9
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
257.8
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
255.2
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
255.0
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
254.5
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
253.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
244.4
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
244.2
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
241.7
GTEX-P44H-0011-R4A-SM-2XCEW
40-49 years, male
241.2
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
239.7
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
235.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
232.3
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
226.8
GTEX-18464-0011-R4a-SM-7LG6T
50-59 years, male
226.8
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
226.3
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
225.2
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
224.9
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
218.1
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
218.0
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
217.6
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
216.3
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
214.6
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
214.1
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
212.2
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
211.0
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
203.3
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
203.1
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
201.0
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
201.0
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
200.5
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
196.1
GTEX-P44G-0011-R4A-SM-2I3FB
30-39 years, male
194.7
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
194.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
191.7
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
190.8
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
190.0
GTEX-T5JC-0011-R4A-SM-32PLT
20-29 years, male
189.4
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
187.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
186.3
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
185.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
181.2
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
180.8
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
179.6
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
176.6
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
173.9
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
166.0
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
165.3
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
162.1
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
161.9
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
160.2
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
160.2
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
159.3
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
154.8
GTEX-UTHO-0011-R4A-SM-3GIJP
60-69 years, male
154.7
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
151.5
GTEX-QDT8-0011-R4A-SM-32PKM
30-39 years, female
149.1
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
149.0
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
146.2
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
141.4
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
138.4
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
138.0
GTEX-1JJEA-0011-R4a-SM-EXUTC
60-69 years, male
137.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
134.0
GTEX-Y8DK-0011-R4A-SM-EXUR1
60-69 years, male
133.9
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
133.3
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
133.2
GTEX-N7MS-0011-R4a-SM-2HMKW
60-69 years, male
133.0
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
131.6
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
129.5
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
129.2
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
125.0
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
121.8
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
120.0
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
115.8
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
114.9
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
114.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
114.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
112.8
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
110.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
110.7
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
110.6
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
109.8
GTEX-T6MN-0011-R4A-SM-32QPG
50-59 years, male
109.5
GTEX-ZE9C-0011-R4a-SM-4WKH6
60-69 years, male
105.8
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
102.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
102.1
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
98.8
GTEX-QMR6-0011-R4A-SM-32PKU
50-59 years, male
98.2
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
97.3
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
96.6
GTEX-1JN6P-0011-R4a-SM-EZ6MS
60-69 years, male
96.5
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
96.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
96.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
90.8
GTEX-15DDE-0011-R4b-SM-7KULI
50-59 years, female
89.9
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
88.1
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
82.8
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
82.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
78.8
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
77.3
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
71.4
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
67.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
47.8
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
44.4
GTEX-183WM-0011-R4a-SM-7LG6S
70-79 years, female
40.5
GTEX-1H2FU-0011-R4a-SM-CL551
60-69 years, female
35.9
GTEX-145MI-0011-R4b-SM-5PNZH
60-69 years, female
29.5
GTEX-1CB4J-0011-R4b-SM-9WG5P
60-69 years, male
19.2
GTEX-X4EP-0011-R4B-SM-3P627
60-69 years, female
12.3
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
505.3
Mouse sample
Sample description
nTPM
Amygdala nTPM: 505.3
Samples: 4
Max nTPM: 527.5
Min nTPM: 476.8
Sample A
Male
527.0
Sample B
Male
476.8
Sample C
Female
527.5
Sample D
Female
490.0
AMYGDALA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
