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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:986.8 nTPM
HPA Brain:890.2 nTPM
GTEx:986.8 nTPM
FANTOM5:798.0 Scaled Tags Per Million
Pig:250.6 nTPM
Mouse:216.4 nTPM
Allen mouse:2.0 Expression energy

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

890.2
Sample id Sample description nTPM
Amygdala
nTPM: 890.2
2695 Female, age 67, right hemisphere 1361.1
2814 Male, age 76, right hemisphere 1017.1
2514 Male, age 75, right hemisphere 729.9
1987 Female, age 91, left hemisphere 720.3
2517 Female, age 94, left hemisphere 622.7
Basal amygdala
nTPM: 712.2
2827 Female, age 67, right hemisphere 936.9
2609 Male, age 75, right hemisphere 925.8
2110 Male, age 80, left hemisphere 650.3
2243 Female, age 91, right hemisphere 597.9
1955 Male, age 76, both hemispheres 594.3
2685 Female, age 94, left hemisphere 568.3
Central amygdala
nTPM: 851.2
2826 Female, age 94, left hemisphere 1198.0
2515 Male, age 75, right hemisphere 838.3
1905 Male, age 76, both hemispheres 824.6
2701 Female, age 91, right hemisphere 706.2
2239 Male, age 80, left hemisphere 689.1
Corticomedial amygdala
nTPM: 577.5
2428 Male, age 75, right hemisphere 749.8
2829 Male, age 80, left hemisphere 659.2
2535 Female, age 67, right hemisphere 601.1
2242 Female, age 91, right hemisphere 518.3
2240 Male, age 76, both hemispheres 496.7
2429 Female, age 94, left hemisphere 439.7
Lateral amygdala
nTPM: 882.8
2830 Female, age 67, right hemisphere 1316.4
2516 Male, age 75, right hemisphere 1064.6
1883 Male, age 76, both hemispheres 807.8
2256 Male, age 80, left hemisphere 784.4
2534 Female, age 94, left hemisphere 694.8
2255 Female, age 91, right hemisphere 629.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

986.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 986.8
Samples: 152

Max nTPM: 2572.2
Min nTPM: 11.2
Std nTPM: 425.8
Median nTPM: 872.0
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 2572.2
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 2180.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 2048.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 2022.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 1971.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 1953.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 1930.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 1914.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 1875.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 1814.9
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 1794.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 1741.9
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 1693.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 1678.8
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 1666.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 1635.5
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 1551.7
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 1483.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 1465.6
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 1462.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 1452.4
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 1451.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 1420.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 1408.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 1392.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 1382.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1354.2
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 1326.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 1320.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 1289.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 1288.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 1275.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 1266.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 1251.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 1231.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 1228.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 1218.8
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 1217.6
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 1208.3
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 1207.7
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 1196.8
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 1176.2
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 1167.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 1162.1
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 1151.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 1132.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 1130.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 1117.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 1106.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 1102.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 1086.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 1075.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1072.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 1063.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 1055.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 1048.3
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 1036.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 1029.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 1026.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 1024.6
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 1004.3
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 1002.7
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 1001.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 996.6
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 990.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 986.9
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 970.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 951.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 951.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 947.4
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 931.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 925.2
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 898.4
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 883.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 875.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 873.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 870.1
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 864.9
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 863.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 862.1
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 856.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 855.6
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 847.2
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 835.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 825.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 823.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 818.2
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 796.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 781.2
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 775.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 767.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 766.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 762.9
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 751.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 750.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 749.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 743.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 742.3
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 739.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 738.9
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 737.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 737.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 734.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 731.6
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 731.0
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 729.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 721.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 713.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 708.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 706.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 703.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 693.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 688.5
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 686.5
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 682.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 679.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 663.5
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 644.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 632.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 628.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 624.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 623.3
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 619.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 613.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 609.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 609.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 605.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 603.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 603.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 586.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 585.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 580.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 579.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 578.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 578.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 573.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 565.4
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 564.9
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 564.7
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 528.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 525.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 522.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 520.7
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 519.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 514.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 499.4
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 488.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 481.4
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 466.6
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 414.5
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 293.6
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 11.2
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

798.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 798.0
FF:10151-102I7 76 years, female 798.0

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

250.6
Pig sample Sample description nTPM
Amygdala
nTPM: 250.6
Samples: 4

Max nTPM: 318.1
Min nTPM: 171.8
Sample A Female 223.5
Sample B Female 318.1
Sample C Male 289.0
Sample D Male 171.8

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

216.4
Mouse sample Sample description nTPM
Amygdala
nTPM: 216.4
Samples: 4

Max nTPM: 316.9
Min nTPM: 180.5
Sample A Male 183.8
Sample B Male 184.5
Sample C Female 316.9
Sample D Female 180.5

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

2.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 2.0
71836842 Antisense, RP_051017_02_C05, Mouse strain C57BL/6J (56 days, male) 3.4
68196931 Antisense, RP_041116_01_F10, Mouse strain C57BL/6J (56 days, male) 0.6

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