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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
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Retina
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:735.1 nTPM
GTEx:735.1 nTPM
FANTOM5:596.9 Scaled Tags Per Million
Pig:953.7 nTPM
Mouse:841.2 nTPM

RETINA - Annotated protein expression
Pending normal tissue analysis

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

735.1
GTEx sample id Sample description nTPM
Retina
Average nTPM: 735.1
Samples: 105

Max nTPM: 1363.7
Min nTPM: 429.6
Std nTPM: 158.6
Median nTPM:
218_1 71 years, female 1363.7
375_1 74 years, female 1178.1
35_1 74 years, female 1127.3
319_1 81 years, male 1032.4
447_1 81 years, male 1008.9
237_1 82 years, male 997.5
6_1 73 years, female 985.6
379_1 60 years, male 976.6
352_1 62 years, male 971.5
354_1 81 years, female 951.8
386_1 76 years, male 928.6
347_1 72 years, male 921.3
322_1 76 years, male 920.4
307_1 66 years, female 917.9
377_1 82 years, female 917.1
384_1 83 years, male 888.6
243_1 75 years, male 888.0
394_1 75 years, female 872.7
350_1 84 years, female 868.8
316_1 62 years, male 855.3
353_1 82 years, female 854.6
321_1 62 years, female 854.1
2_1 77 years, female 852.6
355_1 70 years, female 851.5
389_1 86 years, female 837.8
246_1 77 years, male 828.8
172_1 72 years, female 818.8
425_1 59 years, female 815.1
117_1 61 years, male 811.9
376_1 75 years, female 805.2
173_1 67 years, male 789.3
126_1 63 years, male 777.6
311_1 78 years, male 772.4
495_1 57 years, female 772.1
265_1 87 years, male 771.6
356_1 87 years, female 768.0
318_1 68 years, male 766.9
229_1 69 years, female 766.4
317_1 60 years, male 765.7
163_1 78 years, male 765.0
335_1 73 years, female 764.0
145_1 84 years, male 755.0
351_1 91 years, male 751.3
526_1 61 years, male 744.7
41_1 94 years, female 742.3
189_1 76 years, male 740.4
43_1 64 years, female 730.3
266_1 85 years, male 728.8
153_1 70 years, female 724.6
518_1 75 years, female 723.8
405_1 91 years, male 723.1
324_1 76 years, male 722.0
349_1 83 years, male 720.5
99_1 64 years, male 720.0
286_1 68 years, female 719.2
320_1 89 years, female 718.3
4_1 88 years, female 710.9
406_1 79 years, male 710.6
177_1 74 years, male 703.7
293_1 68 years, female 691.6
308_1 70 years, female 688.3
414_1 84 years, female 687.6
81_1 67 years, male 686.8
415_1 77 years, female 686.6
9_1 66 years, female 684.2
480_1 63 years, male 676.3
17_1 71 years, male 673.6
315_1 62 years, female 671.2
503_1 68 years, male 669.5
292_1 71 years, male 667.4
468_1 89 years, male 667.0
348_1 84 years, male 665.7
396_1 62 years, male 663.5
137_1 83 years, male 657.4
251_1 78 years, male 647.1
115_1 83 years, male 645.6
162_1 79 years, female 637.8
499_1 55 years, female 637.7
142_1 61 years, female 629.1
42_1 85 years, male 625.0
254_1 77 years, female 623.6
404_1 82 years, female 617.2
313_1 79 years, female 615.7
466_1 57 years, female 608.3
139_1 64 years, female 603.5
119_1 70 years, female 601.4
291_1 76 years, male 600.9
490_1 67 years, female 597.4
452_1 88 years, female 590.4
18_1 88 years, male 579.6
217_1 76 years, male 578.2
120_1 70 years, female 576.9
32_1 67 years, male 562.7
517_1 88 years, male 559.6
264_1 73 years, female 546.6
295_1 61 years, female 538.4
288_1 66 years, female 535.4
89_1 63 years, male 532.2
506_1 65 years, male 520.1
491_1 89 years, female 517.2
109_1 81 years, female 500.6
314_1 67 years, male 450.8
501_1 88 years, male 438.6
149_1 88 years, male 434.4
413_1 59 years, female 429.6
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

596.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 596.9
FF:10030-101E3 24-65 years, mixed 596.9

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

953.7
Pig sample Sample description nTPM
Retina
nTPM: 953.7
Samples: 4

Max nTPM: 1236.5
Min nTPM: 781.4
Sample A Female 926.2
Sample B Female 870.7
Sample C Male 1236.5
Sample D Male 781.4

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

841.2
Mouse sample Sample description nTPM
Retina
nTPM: 841.2
Samples: 4

Max nTPM: 950.4
Min nTPM: 770.6
Sample A Male 821.2
Sample B Male 822.5
Sample C Female 950.4
Sample D Female 770.6

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