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TISSUE PRIMARY DATA RETINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
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Retina
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:708.7 nTPM
GTEx:708.7 nTPM
FANTOM5:2551.0 Scaled Tags Per Million
Pig:147.8 nTPM
Mouse:160.0 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

708.7
GTEx sample id Sample description nTPM
Retina
Average nTPM: 708.7
Samples: 105

Max nTPM: 2046.6
Min nTPM: 372.4
Std nTPM: 273.4
Median nTPM:
308_1 70 years, female 2046.6
41_1 94 years, female 1562.9
384_1 83 years, male 1507.9
307_1 66 years, female 1364.5
495_1 57 years, female 1322.0
452_1 88 years, female 1165.2
351_1 91 years, male 1134.8
42_1 85 years, male 1119.2
173_1 67 years, male 1061.2
491_1 89 years, female 1058.9
2_1 77 years, female 1045.0
137_1 83 years, male 1036.2
295_1 61 years, female 1035.0
314_1 67 years, male 1020.5
447_1 81 years, male 1006.7
119_1 70 years, female 932.7
311_1 78 years, male 925.7
4_1 88 years, female 924.8
315_1 62 years, female 918.2
501_1 88 years, male 907.5
218_1 71 years, female 900.0
379_1 60 years, male 879.8
375_1 74 years, female 827.8
348_1 84 years, male 822.9
17_1 71 years, male 818.1
347_1 72 years, male 794.8
120_1 70 years, female 763.5
526_1 61 years, male 759.3
490_1 67 years, female 758.3
506_1 65 years, male 755.5
139_1 64 years, female 753.1
406_1 79 years, male 752.8
322_1 76 years, male 751.8
237_1 82 years, male 742.5
189_1 76 years, male 741.3
354_1 81 years, female 738.9
313_1 79 years, female 738.3
353_1 82 years, female 737.9
89_1 63 years, male 735.8
145_1 84 years, male 729.2
317_1 60 years, male 719.9
414_1 84 years, female 719.0
389_1 86 years, female 716.6
264_1 73 years, female 710.3
377_1 82 years, female 709.1
35_1 74 years, female 703.3
321_1 62 years, female 687.2
349_1 83 years, male 686.1
288_1 66 years, female 682.6
394_1 75 years, female 672.4
386_1 76 years, male 659.8
396_1 62 years, male 649.1
291_1 76 years, male 643.7
293_1 68 years, female 643.5
319_1 81 years, male 637.2
126_1 63 years, male 636.7
376_1 75 years, female 636.2
117_1 61 years, male 622.0
6_1 73 years, female 620.0
350_1 84 years, female 608.4
518_1 75 years, female 603.3
254_1 77 years, female 591.2
109_1 81 years, female 583.9
265_1 87 years, male 582.6
356_1 87 years, female 582.1
99_1 64 years, male 576.2
163_1 78 years, male 573.5
320_1 89 years, female 572.3
503_1 68 years, male 566.7
243_1 75 years, male 562.1
18_1 88 years, male 561.7
480_1 63 years, male 559.0
324_1 76 years, male 554.2
177_1 74 years, male 539.5
316_1 62 years, male 538.2
251_1 78 years, male 531.8
266_1 85 years, male 521.5
286_1 68 years, female 518.5
142_1 61 years, female 515.1
468_1 89 years, male 513.2
415_1 77 years, female 510.6
115_1 83 years, male 502.9
172_1 72 years, female 502.7
499_1 55 years, female 495.8
318_1 68 years, male 493.0
162_1 79 years, female 478.0
405_1 91 years, male 473.1
246_1 77 years, male 469.9
355_1 70 years, female 469.1
425_1 59 years, female 464.6
517_1 88 years, male 463.6
404_1 82 years, female 460.5
217_1 76 years, male 459.6
153_1 70 years, female 455.8
81_1 67 years, male 442.8
43_1 64 years, female 441.1
292_1 71 years, male 439.9
352_1 62 years, male 437.8
413_1 59 years, female 433.7
466_1 57 years, female 427.1
149_1 88 years, male 419.1
32_1 67 years, male 404.8
9_1 66 years, female 400.1
229_1 69 years, female 388.3
335_1 73 years, female 372.4
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

2551.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 2551.0
FF:10030-101E3 24-65 years, mixed 2551.0

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

147.8
Pig sample Sample description nTPM
Retina
nTPM: 147.9
Samples: 4

Max nTPM: 229.2
Min nTPM: 97.0
Sample A Female 97.0
Sample B Female 148.3
Sample C Male 229.2
Sample D Male 116.9

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

160.0
Mouse sample Sample description nTPM
Retina
nTPM: 160.0
Samples: 4

Max nTPM: 186.6
Min nTPM: 114.5
Sample A Male 173.2
Sample B Male 114.5
Sample C Female 165.6
Sample D Female 186.6

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