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BRAIN MEDULLA OBLONGATA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Medulla oblongata
MEDULLA OBLONGATA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:709.4 nTPM
FANTOM5:436.2 Scaled Tags Per Million
Allen mouse:13.0 Expression energy

MEDULLA OBLONGATA - Annotated protein expression
Pending normal tissue analysis

MEDULLA OBLONGATA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

709.4
Sample id Sample description nTPM
Area postrema
nTPM: 561.8
2306 Male, age 80, both hemispheres 641.9
2799 Male, age 61, both hemispheres 539.7
2054 Male, age 76, both hemispheres 503.7
Dorsal medullary reticular nucleus
nTPM: 516.0
2040 Female, age 85, both hemispheres 614.0
2373 Male, age 61, both hemispheres 500.1
2088 Male, age 76, both hemispheres 433.7
Dorsal motor vagal complex
nTPM: 649.8
2133 Female, age 91, both hemispheres 775.7
2844 Male, age 55, unknown 761.9
2813 Female, age 72, unknown 745.2
2000 Male, age 74, unknown 683.5
2807 Female, age 85, both hemispheres 678.5
2643 Male, age 74, both hemispheres 635.2
2185 Male, age 76, both hemispheres 478.3
2797 Male, age 61, both hemispheres 440.0
Gigantocellular reticular nuclei, medullary
nTPM: 501.5
2310 Male, age 80, both hemispheres 593.7
2462 Male, age 74, both hemispheres 524.1
2314 Male, age 61, both hemispheres 521.2
2387 Female, age 91, both hemispheres 507.6
2022 Male, age 76, right hemisphere 437.6
1876 Female, age 85, both hemispheres 424.7
Gigantocellular reticular nuclei, pars
nTPM: 535.5
2706 Male, age 80, both hemispheres 577.5
2336 Male, age 61, both hemispheres 562.9
2330 Male, age 80, both hemispheres 535.8
2084 Female, age 85, both hemispheres 501.6
2168 Male, age 76, both hemispheres 499.8
Inferior olive
nTPM: 687.6
2628 Female, age 91, both hemispheres 762.4
2085 Female, age 85, both hemispheres 705.8
2563 Male, age 74, both hemispheres 679.9
2178 Male, age 61, both hemispheres 665.7
2379 Male, age 80, both hemispheres 624.2
Lateral medullary reticular nucleus
nTPM: 586.3
2374 Male, age 61, both hemispheres 710.1
2190 Female, age 85, both hemispheres 578.4
2852 Male, age 80, both hemispheres 572.5
2305 Male, age 74, both hemispheres 569.4
2804 Female, age 91, both hemispheres 551.3
2044 Male, age 76, both hemispheres 536.1
Medial olivary nucleus
nTPM: 578.7
2851 Male, age 80, both hemispheres 679.8
1962 Male, age 76, both hemispheres 576.5
2138 Female, age 91, both hemispheres 544.2
1943 Male, age 61, both hemispheres 514.3
Medial vestibular nucleus
nTPM: 583.9
2624 Male, age 61, both hemispheres 762.2
2134 Male, age 76, both hemispheres 713.1
2801 Male, age 74, both hemispheres 616.3
2803 Female, age 91, both hemispheres 510.9
2743 Female, age 85, both hemispheres 451.7
2093 Male, age 80, both hemispheres 449.5
Motor hypoglossal nucleus
nTPM: 643.5
2461 Male, age 61, both hemispheres 920.6
2182 Male, age 80, both hemispheres 706.6
2132 Female, age 85, both hemispheres 555.1
2125 Female, age 91, both hemispheres 527.9
2277 Male, age 76, both hemispheres 507.2
Nucleus ambiguus
nTPM: 538.0
2096 Female, age 85, both hemispheres 572.5
2071 Male, age 76, both hemispheres 503.4
Nucleus cuneatus
nTPM: 516.2
2564 Male, age 74, both hemispheres 675.4
2562 Male, age 61, both hemispheres 566.9
2808 Female, age 85, both hemispheres 561.0
2805 Female, age 91, both hemispheres 554.3
2381 Male, age 80, both hemispheres 492.6
2376 Male, age 61, both hemispheres 473.3
2131 Male, age 76, both hemispheres 453.9
2380 Male, age 80, both hemispheres 444.6
2100 Male, age 76, both hemispheres 424.0
Nucleus gracilis
nTPM: 615.7
2627 Male, age 74, both hemispheres 676.7
2299 Female, age 85, both hemispheres 624.1
2382 Male, age 80, both hemispheres 546.2
Nucleus raphe obscurus
nTPM: 531.2
2800 Male, age 61, midline 570.6
2845 Female, age 85, midline 561.9
2142 Male, age 76, midline 461.2
Nucleus raphe pallidus
nTPM: 707.4
1924 Male, age 61, midline 882.8
2183 Male, age 80, midline 744.7
2145 Male, age 76, midline 494.8
Nucleus tractus solitarii
nTPM: 601.3
2191 Female, age 85, both hemispheres 842.0
2307 Male, age 80, both hemispheres 593.8
2656 Male, age 76, both hemispheres 538.6
2144 Female, age 91, right hemisphere 430.7
Parvicellular reticular nuclei
nTPM: 560.9
2119 Male, age 80, both hemispheres 610.8
2558 Male, age 74, both hemispheres 542.1
2095 Male, age 76, both hemispheres 529.9
Parvicellular reticular nuclei, medullary
nTPM: 632.0
2091 Female, age 85, both hemispheres 766.0
2189 Female, age 91, both hemispheres 632.4
2181 Male, age 80, left hemisphere 497.6
Peritrigeminal nucleus
nTPM: 649.0
2067 Female, age 85, both hemispheres 832.1
2136 Male, age 76, both hemispheres 566.5
2179 Male, age 61, both hemispheres 548.5
Prepositus hypoglossal nucleus
nTPM: 495.5
2086 Male, age 80, both hemispheres 570.0
2855 Female, age 85, right hemisphere 421.1
Spinal trigeminal nucleus, caudal
nTPM: 580.2
2390 Female, age 91, both hemispheres 766.8
2642 Male, age 74, both hemispheres 570.8
2308 Male, age 80, both hemispheres 529.1
2312 Male, age 61, both hemispheres 523.4
2447 Male, age 76, both hemispheres 510.7
Spinal trigeminal nucleus, interpolar
nTPM: 709.4
2625 Male, age 61, both hemispheres 1234.9
2033 Male, age 80, both hemispheres 616.9
2066 Male, age 76, right hemisphere 601.4
2386 Female, age 85, both hemispheres 593.0
2389 Female, age 91, both hemispheres 500.6
Spinal vestibular nucleus
nTPM: 505.2
2796 Male, age 61, both hemispheres 627.5
2780 Male, age 80, both hemispheres 564.3
2748 Male, age 76, both hemispheres 489.7
2186 Female, age 91, both hemispheres 479.9
2384 Male, age 74, both hemispheres 452.6
2806 Female, age 85, both hemispheres 417.4
Superior vestibular nucleus
nTPM: 545.6
2383 Male, age 74, both hemispheres 591.9
2015 Male, age 80, both hemispheres 525.7
2061 Male, age 76, both hemispheres 519.1
Ventral medullary reticular nucleus
nTPM: 522.1
2372 Male, age 61, both hemispheres 559.9
2060 Male, age 76, both hemispheres 484.3
Ventrolateral medulla, A1-C1 cell groups
nTPM: 646.7
2741 Female, age 85, both hemispheres 759.2
2180 Male, age 61, both hemispheres 654.3
2118 Male, age 80, both hemispheres 635.5
2302 Female, age 91, both hemispheres 624.5
1986 Male, age 76, both hemispheres 559.8

MEDULLA OBLONGATA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

436.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Medulla oblongata
Scaled Tags Per Million: 436.2
FF:10174-103C3 60 years, female 506.5
FF:10155-103A2 76 years, female 402.3
FF:10038-101F2 18-64 years, mixed 400.0

MEDULLA OBLONGATA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

13.0
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 13.0
73521810 Antisense, RP_051101_03_A09, Mouse strain C57BL/6J (56 days, male) 14.6
69816996 Antisense, RP_050510_02_D07, Mouse strain C57BL/6J (56 days, male) 11.3

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