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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:999.8 nTPM
HPA Brain:699.9 nTPM
GTEx:999.8 nTPM
FANTOM5:386.6 Scaled Tags Per Million

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

699.9
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 511.0
2565 Male, age 75, midline 695.0
1981 Female, age 72, midline 575.6
2194 Female, age 79, both hemispheres 506.8
2816 Male, age 47, midline 426.7
2048 Male, age 55, midline 350.7
Cervical spinal cord, dorsal horn
nTPM: 616.6
2297 Male, age 75, both hemispheres 829.1
2069 Male, age 47, both hemispheres 674.5
2721 Male, age 90, both hemispheres 646.5
2173 Female, age 72, unknown 587.0
1877 Male, age 55, unknown 482.9
2296 Male, age 66, both hemispheres 479.7
Cervical spinal cord, ventral horn
nTPM: 699.9
2809 Male, age 90, both hemispheres 1091.1
2480 Male, age 75, both hemispheres 860.6
2098 Female, age 72, unknown 798.4
2295 Male, age 66, both hemispheres 555.3
2068 Male, age 55, unknown 472.3
2820 Female, age 79, both hemispheres 421.5

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

999.8
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 999.8
Samples: 159

Max nTPM: 3245.1
Min nTPM: 363.2
Std nTPM: 478.5
Median nTPM: 880.7
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 3245.1
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 2950.0
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 2752.6
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 2592.6
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 2327.1
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 1998.4
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 1893.6
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 1794.6
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 1750.9
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 1742.9
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 1718.9
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 1709.8
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 1697.3
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 1676.2
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 1654.1
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 1634.0
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 1619.1
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 1565.0
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 1533.5
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 1513.8
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 1500.8
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 1467.8
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 1453.3
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 1381.4
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 1365.1
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 1362.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 1353.7
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 1317.2
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 1301.1
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 1300.3
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 1288.6
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 1286.6
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 1285.1
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 1280.5
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 1275.5
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 1273.9
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 1236.7
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 1215.4
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 1210.9
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 1204.0
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 1198.1
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 1187.7
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 1186.6
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 1183.4
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 1156.8
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 1153.7
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 1148.1
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 1147.1
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 1140.8
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 1122.8
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 1106.2
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 1102.5
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 1091.0
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 1082.9
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 1071.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 1031.9
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 1024.9
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 1018.8
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 1011.9
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 1005.5
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 1000.7
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 1000.4
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 998.6
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 986.2
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 967.8
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 961.1
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 940.2
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 940.0
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 938.4
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 922.9
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 915.1
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 911.4
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 907.0
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 906.0
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 902.3
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 899.9
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 893.2
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 892.9
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 882.7
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 880.7
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 880.0
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 875.6
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 866.5
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 859.7
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 853.1
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 828.7
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 817.1
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 815.9
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 813.7
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 813.4
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 811.2
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 808.5
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 808.3
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 805.6
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 792.8
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 773.5
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 767.1
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 763.0
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 757.8
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 755.1
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 753.4
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 738.0
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 737.5
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 732.1
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 731.8
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 730.4
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 715.2
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 713.5
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 706.1
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 699.8
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 698.7
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 693.9
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 683.9
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 682.2
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 669.1
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 667.1
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 661.3
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 658.0
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 653.7
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 653.6
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 652.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 649.7
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 648.8
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 645.7
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 641.5
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 639.9
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 639.5
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 636.6
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 636.1
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 631.5
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 631.0
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 626.7
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 612.5
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 601.0
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 597.5
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 596.0
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 595.5
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 594.5
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 593.4
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 590.2
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 589.9
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 589.0
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 585.5
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 578.3
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 568.9
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 556.2
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 538.0
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 531.2
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 523.0
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 518.3
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 511.1
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 506.4
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 496.7
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 490.1
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 459.3
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 458.4
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 454.4
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 395.8
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 363.2
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

386.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 386.6
FF:10181-103D1 60 years, female 435.5
FF:10159-103A6 76 years, female 337.6

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