MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:1158.8 nTPM
HPA Brain:670.6 nTPM
GTEx:1158.8 nTPM
FANTOM5:475.7 Scaled Tags Per Million
Mouse:0.1 nTPM
Allen mouse:17.6 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 670.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 429.2
2666 Male, age 74, left hemisphere 601.9
1827 Male, age 72, unknown 592.5
2828 Female, age 72, unknown 499.3
1870 Female, age 42, unknown 447.5
2019 Male, age 18, unknown 425.2
2411 Female, age 72, unknown 406.1
1830 Male, age 51, unknown 359.4
1833 Male, age 53, unknown 344.2
2219 Male, age 76, both hemispheres 342.9
2586 Male, age 75, left hemisphere 272.9
Dorsal raphe nucleus
nTPM: 489.7
2298 Female, age 72, unknown 631.2
2750 Male, age 76, both hemispheres 564.5
2047 Male, age 72, unknown 525.7
1828 Male, age 53, unknown 416.5
2016 Female, age 72, unknown 310.6
Inferior colliculus
nTPM: 344.5
2097 Female, age 72, unknown 380.7
2849 Male, age 72, unknown 366.3
1848 Female, age 42, unknown 326.1
1890 Male, age 53, unknown 304.7
Median raphe nucleus
nTPM: 656.8
2220 Male, age 76, midline 656.8
Periaquaductal grey, anterior
nTPM: 659.4
1795 Male, age 51, unknown 854.6
1947 Male, age 18, unknown 592.0
2502 Female, age 75, unknown 531.5
Periaquaductal grey, dorsal
nTPM: 448.5
2850 Male, age 76, both hemispheres 589.9
1831 Male, age 72, unknown 519.0
1840 Male, age 53, unknown 362.8
2464 Female, age 72, unknown 322.2
Periaquaductal grey, lateral
nTPM: 467.8
2272 Male, age 74, both hemispheres 541.3
2140 Male, age 76, both hemispheres 459.3
2053 Male, age 18, unknown 402.7
Pretectal area
nTPM: 670.6
1816 Male, age 51, unknown 1202.3
1944 Female, age 72, unknown 1085.4
2007 Male, age 72, unknown 858.7
1817 Female, age 42, unknown 842.1
1815 Male, age 53, unknown 804.1
2224 Female, age 72, unknown 511.1
2667 Female, age 75, unknown 484.8
2825 Male, age 18, unknown 449.5
2273 Male, age 74, both hemispheres 420.1
2316 Male, age 76, right hemisphere 362.6
2407 Male, age 75, both hemispheres 355.9
Red nucleus
nTPM: 340.5
2725 Female, age 75, unknown 557.6
2785 Male, age 18, unknown 515.1
2588 Male, age 74, left hemisphere 430.5
2584 Male, age 75, left hemisphere 382.0
2823 Male, age 76, right hemisphere 378.6
2503 Female, age 72, unknown 359.1
1821 Female, age 72, unknown 281.5
1904 Male, age 53, unknown 250.5
1865 Male, age 51, unknown 241.5
1954 Female, age 42, unknown 233.2
2227 Male, age 72, unknown 229.6
2769 Male, age 72, unknown 226.9
Substantia nigra
nTPM: 529.9
2665 Male, age 74, both hemispheres 838.2
1889 Female, age 72, unknown 740.7
1941 Male, age 53, unknown 660.8
1916 Female, age 42, unknown 565.9
1851 Male, age 51, unknown 533.3
2590 Female, age 75, unknown 480.8
2409 Female, age 72, unknown 388.8
2583 Male, age 75, right hemisphere 385.6
2699 Male, age 18, unknown 368.1
2241 Male, age 72, unknown 337.2
Superior colliculus
nTPM: 533.3
2087 Female, age 72, unknown 737.3
2261 Male, age 18, unknown 732.7
1913 Female, age 42, unknown 673.9
1796 Male, age 53, unknown 671.4
2587 Male, age 74, left hemisphere 556.8
1995 Male, age 72, unknown 542.4
2668 Female, age 75, unknown 473.2
1895 Male, age 76, right hemisphere 366.6
1839 Male, age 51, unknown 332.0
2664 Male, age 75, both hemispheres 247.0
Ventral tegmental area
nTPM: 534.0
2223 Female, age 72, unknown 635.4
2218 Male, age 76, both hemispheres 615.8
2021 Male, age 53, unknown 558.1
1915 Female, age 42, unknown 513.4
1942 Male, age 51, unknown 455.4
2410 Female, age 72, unknown 425.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 1158.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1158.8
Samples: 139

Max nTPM: 3145.8
Min nTPM: 556.3
Std nTPM: 446.3
Median nTPM: 1061.5
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 3145.8
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 2733.6
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 2494.9
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 2444.0
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 2367.7
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 2335.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 2312.8
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 2007.6
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 1894.3
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 1839.9
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 1778.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 475.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 475.7
FF:10158-103A5 76 years, female 475.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 0.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 0.1
Samples: 4

Max nTPM: 0.3
Min nTPM: 0.0
Sample A Male 0.2
Sample B Male 0.0
Sample C Female 0.3
Sample D Female 0.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 17.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 17.6
73521810 Antisense, RP_051101_03_A09, Mouse strain C57BL/6J (56 days, male) 18.3
69816996 Antisense, RP_050510_02_D07, Mouse strain C57BL/6J (56 days, male) 16.8

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