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TISSUE SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:2093.9 nTPM
HPA:1875.8 nTPM
GTEx:2093.9 nTPM
FANTOM5:1118.3 Scaled Tags Per Million

SMALL INTESTINE - Annotated protein expression
Pending normal tissue analysis

SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1875.8
overview
Male, age 65
Small intestine sample 232
nTPM: 1456.2
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 2273
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 1809.6
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 1964.3

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2093.9
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 2093.9
Samples: 187

Max nTPM: 4554.0
Min nTPM: 599.0
Std nTPM: 748.3
Median nTPM: 2073.4
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 4554.0
GTEX-111YS-1426-SM-5GID8 60-69 years, male 4403.8
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 4021.4
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 3778.8
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 3755.8
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 3714.8
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 3653.3
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 3576.4
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 3548.9
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 3476.7
GTEX-YFCO-1326-SM-664NV 40-49 years, male 3461.7
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 3421.1
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 3376.9
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 3325.7
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 3312.1
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 3261.6
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 3240.8
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 3229.6
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 3161.1
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 3092.4
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 3076.4
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 2994.0
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 2977.9
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 2973.5
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 2960.0
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 2923.4
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 2902.6
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 2884.8
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 2881.1
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 2851.2
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 2751.1
GTEX-1122O-1326-SM-5H11F 60-69 years, female 2746.0
GTEX-14PK6-1626-SM-6871I 70-79 years, female 2707.3
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 2704.4
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 2700.5
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 2669.6
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 2647.1
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 2640.6
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 2605.6
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 2602.9
GTEX-ZTSS-0926-SM-59865 40-49 years, male 2578.2
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 2558.9
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 2516.8
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 2516.7
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 2485.7
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 2484.3
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 2479.9
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 2473.5
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 2471.5
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 2462.5
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 2452.9
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 2424.9
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 2423.8
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 2421.3
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 2412.7
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 2394.1
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 2393.5
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 2390.8
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 2377.8
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 2348.3
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 2338.7
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 2297.1
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 2280.5
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 2272.7
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 2266.3
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 2256.6
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 2252.5
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 2251.9
GTEX-14PKU-1626-SM-6871C 40-49 years, female 2246.4
GTEX-144GM-1026-SM-79OKU 20-29 years, male 2243.8
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 2231.2
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 2210.5
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 2210.5
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 2206.2
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 2201.9
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 2184.5
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 2175.3
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 2165.6
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 2163.6
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 2156.9
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 2145.1
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 2144.0
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 2132.8
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 2129.2
GTEX-14PN3-2026-SM-68729 60-69 years, female 2127.5
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 2116.0
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 2094.5
GTEX-1192X-2526-SM-59868 50-59 years, male 2093.5
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 2088.3
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 2087.4
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 2084.6
GTEX-13113-1226-SM-5EGHT 60-69 years, female 2083.2
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 2080.9
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 2073.4
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 2026.9
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 2001.8
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 1997.9
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 1990.2
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 1981.2
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 1975.9
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 1973.4
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 1969.4
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 1953.5
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 1949.9
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 1944.3
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 1940.4
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 1921.7
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 1921.3
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 1893.7
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 1893.7
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 1893.6
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 1884.3
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 1883.4
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 1869.1
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 1850.3
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 1848.4
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 1835.6
GTEX-13O61-1326-SM-5KM31 60-69 years, male 1821.3
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 1820.6
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 1819.1
GTEX-1C475-1426-SM-793CH 40-49 years, female 1812.3
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 1799.4
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 1782.7
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 1777.2
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 1763.7
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 1736.3
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 1724.2
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 1716.9
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 1709.5
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 1701.0
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 1682.6
GTEX-13111-1426-SM-5DUW3 50-59 years, male 1676.9
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 1658.6
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 1651.1
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 1649.7
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 1636.2
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 1634.0
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 1611.5
GTEX-183FY-1626-SM-793D8 20-29 years, male 1609.2
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 1600.4
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 1596.6
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 1595.4
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 1584.1
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 1582.1
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 1564.7
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 1562.9
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 1527.3
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 1522.5
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 1521.9
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 1509.0
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 1507.1
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 1490.6
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 1460.2
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 1415.0
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 1408.4
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 1406.2
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 1381.0
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 1347.2
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 1342.2
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 1334.1
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 1304.6
GTEX-117YX-0326-SM-5GICL 50-59 years, male 1298.7
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 1287.4
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 1266.9
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 1266.0
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 1260.6
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 1204.0
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 1171.3
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 1153.6
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 1145.4
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 1143.2
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 1128.8
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 1102.4
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 1092.9
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 1053.5
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 1033.4
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 969.4
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 898.0
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 866.5
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 831.8
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 761.2
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 751.9
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 720.5
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 710.3
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 707.1
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 656.8
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 599.0
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1118.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 1118.3
FF:10024-101D6 15,40,85 years, mixed 1118.3

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