We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
MAP4
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • MAP4
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: High
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:225.0 nTPM
FANTOM5:341.6 Scaled Tags Per Million
Pig:63.9 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA038149Antibody HPA038150
Glial cells HighMedium
Neuronal cells Not detectedNot detected





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

225.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 225.0
Samples: 246

Max nTPM: 810.7
Min nTPM: 91.9
Std nTPM: 100.9
Median nTPM: 200.8
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 810.7
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 688.8
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 578.6
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 523.8
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 512.5
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 505.5
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 491.6
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 477.3
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 468.7
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 467.3
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 466.9
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 431.2
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 423.0
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 418.7
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 416.4
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 413.2
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 412.6
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 403.7
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 399.6
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 392.1
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 382.9
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 377.2
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 360.5
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 349.0
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 348.9
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 339.0
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 335.2
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 328.8
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 325.3
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 325.1
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 322.0
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 319.2
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 318.3
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 317.5
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 317.0
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 310.6
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 305.4
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 304.0
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 300.2
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 298.8
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 298.0
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 292.9
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 287.4
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 286.7
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 286.0
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 282.8
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 279.2
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 278.6
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 278.0
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 277.0
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 276.8
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 274.7
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 273.5
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 269.7
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 269.6
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 269.4
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 266.5
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 264.4
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 263.7
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 263.6
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 263.6
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 259.0
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 257.2
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 256.9
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 251.2
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 250.5
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 249.5
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 249.3
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 245.2
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 244.2
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 243.4
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 242.6
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 242.3
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 237.1
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 236.7
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 236.1
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 236.0
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 236.0
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 234.9
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 234.1
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 234.0
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 231.2
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 230.6
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 230.1
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 230.0
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 229.4
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 229.4
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 229.4
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 228.0
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 226.3
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 225.9
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 225.6
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 223.1
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 223.0
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 221.7
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 221.6
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 220.4
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 219.9
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 219.8
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 219.7
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 219.2
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 218.1
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 217.2
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 215.2
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 215.0
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 214.6
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 213.6
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 210.6
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 209.9
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 209.6
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 208.5
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 207.7
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 207.2
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 206.3
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 205.7
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 205.5
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 204.4
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 204.1
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 203.4
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 202.9
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 202.0
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 201.9
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 201.3
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 200.4
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 199.9
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 199.7
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 199.7
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 199.5
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 197.1
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 196.4
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 195.5
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 193.5
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 192.4
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 192.1
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 191.5
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 191.2
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 190.8
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 190.3
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 189.8
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 189.6
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 189.5
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 188.6
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 186.9
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 186.4
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 185.5
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 181.6
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 181.4
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 178.3
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 178.1
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 178.0
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 176.2
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 175.5
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 174.1
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 173.1
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 172.9
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 172.4
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 172.3
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 171.7
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 170.8
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 168.8
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 168.7
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 168.2
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 168.0
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 167.7
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 167.2
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 167.0
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 166.1
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 165.3
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 165.2
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 164.4
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 164.2
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 164.0
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 163.9
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 162.8
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 161.7
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 160.6
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 160.3
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 160.0
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 160.0
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 159.4
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 159.3
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 158.7
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 158.5
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 158.3
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 157.9
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 157.8
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 157.6
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 157.3
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 156.1
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 154.9
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 153.6
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 152.9
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 152.8
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 152.8
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 151.2
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 151.0
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 150.4
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 150.3
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 149.5
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 148.0
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 147.7
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 147.5
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 147.3
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 146.9
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 146.9
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 146.6
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 146.2
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 144.8
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 142.6
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 142.1
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 141.6
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 140.7
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 139.6
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 139.3
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 138.1
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 137.7
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 137.3
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 136.7
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 136.3
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 135.8
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 135.7
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 135.1
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 134.0
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 133.9
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 133.9
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 133.0
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 132.7
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 132.2
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 131.1
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 127.5
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 127.2
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 125.9
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 125.7
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 125.1
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 125.0
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 124.2
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 123.5
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 122.4
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 122.4
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 119.3
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 117.9
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 111.5
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 109.5
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 107.2
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 106.9
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 91.9
Show allShow less

CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

341.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 341.6
FF:10164-103B2 76 years, female 341.6

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

63.9
Pig sample Sample description nTPM
Caudate
nTPM: 63.9
Samples: 4

Max nTPM: 70.5
Min nTPM: 60.8
Sample A Female 60.9
Sample B Female 63.5
Sample C Male 70.5
Sample D Male 60.8

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org