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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:872.8 nTPM
HPA Brain:812.6 nTPM
GTEx:872.8 nTPM
FANTOM5:796.8 Scaled Tags Per Million
Pig:256.5 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

812.6
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 652.1
2565 Male, age 75, midline 891.5
2816 Male, age 47, midline 663.5
2194 Female, age 79, both hemispheres 615.7
2048 Male, age 55, midline 574.9
1981 Female, age 72, midline 514.7
Cervical spinal cord, dorsal horn
nTPM: 486.6
2296 Male, age 66, both hemispheres 657.7
2173 Female, age 72, unknown 578.6
1877 Male, age 55, unknown 455.0
2069 Male, age 47, both hemispheres 452.9
2297 Male, age 75, both hemispheres 414.2
2721 Male, age 90, both hemispheres 361.2
Cervical spinal cord, ventral horn
nTPM: 812.6
2480 Male, age 75, both hemispheres 1307.7
2809 Male, age 90, both hemispheres 1022.0
2295 Male, age 66, both hemispheres 747.1
2820 Female, age 79, both hemispheres 699.5
2098 Female, age 72, unknown 567.1
2068 Male, age 55, unknown 532.2

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

872.8
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 872.8
Samples: 159

Max nTPM: 2433.4
Min nTPM: 238.0
Std nTPM: 396.4
Median nTPM: 772.0
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 2433.4
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 2318.2
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 2193.2
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 1832.0
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 1714.1
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 1712.2
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 1687.3
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 1677.9
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 1668.9
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 1634.9
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 1579.8
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 1533.0
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 1512.5
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 1484.2
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 1483.3
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 1457.9
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 1429.6
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 1407.4
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 1394.4
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 1344.6
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 1334.3
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 1322.1
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 1313.0
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 1303.0
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 1278.4
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 1277.9
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 1243.1
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 1215.2
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 1211.8
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 1190.9
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 1184.4
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 1146.1
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 1144.0
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 1140.1
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 1132.5
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 1124.7
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 1109.5
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 1058.1
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 1047.3
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 1024.8
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 1021.8
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 1015.9
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 1007.0
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 1002.6
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 1000.1
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 988.1
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 985.6
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 984.7
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 984.0
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 980.5
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 965.8
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 939.0
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 936.1
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 926.6
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 923.4
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 921.5
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 914.2
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 903.8
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 889.3
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 880.8
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 868.8
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 864.4
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 859.8
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 858.8
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 857.1
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 855.7
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 847.7
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 826.8
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 820.9
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 818.1
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 818.1
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 816.4
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 805.9
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 803.0
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 801.1
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 798.4
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 783.6
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 780.2
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 773.0
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 772.0
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 771.2
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 765.2
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 762.3
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 761.5
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 760.5
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 743.5
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 741.8
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 740.7
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 738.4
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 733.0
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 729.6
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 722.6
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 722.2
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 721.4
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 718.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 717.1
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 710.5
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 701.8
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 690.0
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 671.0
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 662.6
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 662.3
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 655.7
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 652.7
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 649.8
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 648.7
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 645.1
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 642.9
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 640.4
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 628.2
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 627.3
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 625.8
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 624.5
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 601.4
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 593.5
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 592.4
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 589.8
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 589.0
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 583.2
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 571.4
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 570.4
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 569.3
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 567.6
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 562.6
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 560.8
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 557.6
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 555.1
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 554.8
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 554.5
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 551.6
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 549.4
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 543.0
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 543.0
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 538.8
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 534.1
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 530.0
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 525.8
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 522.1
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 509.6
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 487.5
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 482.2
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 475.9
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 474.8
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 462.8
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 462.5
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 459.2
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 454.5
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 450.6
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 447.2
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 435.4
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 433.5
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 432.5
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 407.8
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 404.9
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 384.7
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 333.8
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 323.6
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 316.3
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 238.0
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

796.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 796.8
FF:10159-103A6 76 years, female 912.2
FF:10181-103D1 60 years, female 681.4

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

256.5
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 247.5
Samples: 4

Max nTPM: 287.0
Min nTPM: 207.4
Sample A Female 207.4
Sample B Female 260.0
Sample C Male 287.0
Sample D Male 235.7
Ventral spinal cord
nTPM: 256.5
Samples: 4

Max nTPM: 292.7
Min nTPM: 227.2
Sample A Female 256.8
Sample B Female 227.2
Sample C Male 249.3
Sample D Male 292.7

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