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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:82.5 nTPM
HPA:82.5 nTPM
GTEx:73.3 nTPM
FANTOM5:175.8 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA040754Antibody HPA041219Antibody CAB037041Antibody CAB037104
Glandular cells HighMediumHighMedium







SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

82.5
overview
Male, age 65
Small intestine sample 232
nTPM: 98
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 90.3
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 74.2
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 67.4

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

73.3
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 73.3
Samples: 187

Max nTPM: 295.2
Min nTPM: 31.3
Std nTPM: 26.9
Median nTPM: 72.0
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 295.2
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 146.0
GTEX-13O61-1326-SM-5KM31 60-69 years, male 144.8
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 139.9
GTEX-14PK6-1626-SM-6871I 70-79 years, female 123.3
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 119.0
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 118.8
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 118.3
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 116.2
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 112.1
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 108.6
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 107.6
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 107.5
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 105.5
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 105.0
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 104.1
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 100.3
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 99.9
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 98.5
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 94.2
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 94.2
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 93.7
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 93.1
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 93.1
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 91.9
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 91.8
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 91.8
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 91.5
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 90.9
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 89.5
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 89.4
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 88.9
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 88.8
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 88.6
GTEX-1C475-1426-SM-793CH 40-49 years, female 88.5
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 88.3
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 88.2
GTEX-14PKU-1626-SM-6871C 40-49 years, female 87.9
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 87.6
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 87.2
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 86.5
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 86.3
GTEX-144GM-1026-SM-79OKU 20-29 years, male 86.0
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 85.6
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 85.6
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 85.5
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 85.5
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 83.6
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 83.5
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 83.3
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 83.2
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 83.2
GTEX-13113-1226-SM-5EGHT 60-69 years, female 83.1
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 83.1
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 82.7
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 82.7
GTEX-YFCO-1326-SM-664NV 40-49 years, male 82.7
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 81.8
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 81.6
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 81.3
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 80.2
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 79.4
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 78.8
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 78.6
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 78.4
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 78.3
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 78.1
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 77.6
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 77.5
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 77.3
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 77.0
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 76.8
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 76.2
GTEX-1122O-1326-SM-5H11F 60-69 years, female 76.0
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 75.9
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 75.1
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 74.8
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 74.5
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 74.3
GTEX-14PN3-2026-SM-68729 60-69 years, female 74.3
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 74.1
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 74.1
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 74.1
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 73.9
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 73.9
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 73.7
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 73.5
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 73.3
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 73.0
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 72.7
GTEX-111YS-1426-SM-5GID8 60-69 years, male 72.5
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 72.1
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 72.0
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 72.0
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 72.0
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 71.8
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 71.3
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 71.2
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 71.2
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 70.2
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 70.0
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 70.0
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 69.4
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 69.3
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 69.3
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 69.2
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 69.1
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 69.1
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 69.0
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 69.0
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 69.0
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 69.0
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 68.8
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 68.2
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 68.1
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 67.6
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 66.2
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 66.2
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 65.9
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 65.5
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 64.8
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 64.7
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 64.0
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 63.7
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 63.3
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 62.5
GTEX-183FY-1626-SM-793D8 20-29 years, male 62.0
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 61.6
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 61.6
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 60.9
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 60.9
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 60.7
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 60.1
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 60.0
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 59.8
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 59.8
GTEX-1192X-2526-SM-59868 50-59 years, male 59.7
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 59.0
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 58.7
GTEX-ZTSS-0926-SM-59865 40-49 years, male 58.0
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 57.7
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 57.6
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 57.5
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 57.4
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 57.3
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 57.3
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 56.0
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 55.8
GTEX-13111-1426-SM-5DUW3 50-59 years, male 54.8
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 54.1
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 54.1
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 53.9
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 53.9
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 53.5
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 53.5
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 53.2
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 53.2
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 52.6
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 52.3
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 51.7
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 50.4
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 50.1
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 49.2
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 49.0
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 48.2
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 47.5
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 46.6
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 46.1
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 45.0
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 40.6
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 39.8
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 39.0
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 38.6
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 38.3
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 38.3
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 38.2
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 37.9
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 36.2
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 35.2
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 34.5
GTEX-117YX-0326-SM-5GICL 50-59 years, male 34.0
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 33.7
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 32.5
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 32.0
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 31.9
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 31.5
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 31.3
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

175.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 175.8
FF:10024-101D6 15,40,85 years, mixed 175.8

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