HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
Mouse brain, Intensity
Hippocampal formationi 		126.342
RNA expressioni
Consensus:52.4 nTPM
HPA Brain:53.4 nTPM
GTEx:52.4 nTPM
FANTOM5:30.8 Scaled Tags Per Million
Pig:45.3 nTPM
Mouse:31.4 nTPM
Allen mouse:7.1 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA040999Antibody CAB032656
Glial cells Not detectedNot detected
Neuronal cells LowNot detected





HIPPOCAMPAL FORMATION - Mouse brain profilei , antibody CAB079015
Hippocampal formation mean intensity 126.342
intensityi
FRONT BACK
Polymorph layer of the dentate gyrus 92.459
Molecular layer of the dentate gyrus 73.608
Granular dentate gyrus 77.132
CA1 - oriens layer 88.780
CA1 - pyramidal layer 68.298
CA1 - radiatum layer 88.578
CA2 - oriens layer 101.305
CA2 - pyramidal layer 73.396
CA2 - radiatum layer 104.908
CA3 - oriens layer 114.479
CA3 - pyramidal layer 60.506
CA3 - radiatum layer 115.277
Stratum lucidum 84.110
Lacunosum moleculare 45.021
Subiculum 60.406

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 53.4
Sample id Sample description nTPM
Hippocampus
nTPM: 49.6
2621 Female, age 67, right hemisphere 56.4
2148 Female, age 91, left hemisphere 54.1
1898 Male, age 80, left hemisphere 53.7
1855 Male, age 76, left hemisphere 46.3
1911 Female, age 85, right hemisphere 45.4
2529 Female, age 94, left hemisphere 41.9
Dentate gyrus
nTPM: 49.1
2530 Female, age 94, left hemisphere 64.9
2010 Male, age 76, both hemispheres 59.0
1927 Female, age 91, both hemispheres 46.8
2246 Female, age 85, both hemispheres 44.2
2528 Male, age 74, both hemispheres 43.5
2531 Female, age 67, both hemispheres 36.0
Entorhinal gyrus
nTPM: 25.8
2117 Female, age 91, right hemisphere 41.8
1787 Male, age 76, left hemisphere 24.7
2764 Male, age 80, right hemisphere 23.8
2686 Male, age 75, right hemisphere 22.1
1938 Female, age 85, left hemisphere 21.5
2613 Female, age 94, left hemisphere 20.7
Hippocampus, CA1
nTPM: 53.4
2749 Male, age 80, left hemisphere 82.4
1873 Female, age 85, both hemispheres 78.4
2527 Male, age 74, both hemispheres 42.7
2082 Female, age 91, right hemisphere 31.9
2045 Male, age 76, both hemispheres 31.7
Hippocampus, CA2
nTPM: 48.3
1963 Male, age 80, left hemisphere 93.1
2437 Female, age 94, left hemisphere 43.7
1892 Male, age 76, both hemispheres 43.4
2249 Male, age 74, both hemispheres 38.5
1940 Female, age 85, left hemisphere 38.2
2113 Female, age 91, right hemisphere 32.8
Hippocampus, CA3
nTPM: 42.9
2861 Female, age 67, both hemispheres 54.5
2137 Male, age 80, left hemisphere 49.0
2436 Male, age 74, both hemispheres 40.9
1867 Male, age 76, both hemispheres 38.9
1891 Female, age 85, both hemispheres 38.7
2620 Female, age 94, left hemisphere 35.4
Parahippocampal cortex
nTPM: 24.0
2018 Male, age 76, both hemispheres 34.6
2692 Male, age 74, both hemispheres 31.2
2245 Female, age 91, both hemispheres 30.4
2532 Female, age 72, left hemisphere 22.4
1990 Female, age 91, right hemisphere 22.1
2622 Female, age 67, right hemisphere 21.4
1933 Female, age 85, both hemispheres 20.6
2250 Female, age 67, right hemisphere 20.0
2693 Female, age 94, both hemispheres 19.4
1850 Male, age 80, both hemispheres 18.0
Perirhinal gyrus
nTPM: 18.0
2521 Female, age 94, right hemisphere 22.3
1847 Female, age 91, left hemisphere 18.3
1794 Male, age 80, right hemisphere 17.6
2848 Male, age 76, right hemisphere 16.6
1841 Female, age 85, right hemisphere 14.9
Subiculum
nTPM: 39.0
2042 Male, age 76, both hemispheres 54.7
2729 Female, age 91, right hemisphere 47.9
1901 Male, age 80, both hemispheres 44.0
2438 Female, age 94, left hemisphere 32.0
2619 Male, age 74, both hemispheres 31.4
1977 Female, age 85, both hemispheres 24.2

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 52.4
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 52.4
Samples: 197

Max nTPM: 119.1
Min nTPM: 17.9
Std nTPM: 19.4
Median nTPM: 50.2
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 119.1
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 116.7
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 107.7
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 106.1
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 106.0
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 103.7
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 102.7
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 95.7
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 93.8
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 93.7
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 91.0
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 30.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 30.8
FF:10153-102I9 76 years, female 32.5
FF:10169-103B7 60 years, female 29.0

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 45.3
Pig sample Sample description nTPM
Subiculum
nTPM: 26.1
Samples: 4

Max nTPM: 33.1
Min nTPM: 20.0
Sample A Female 33.1
Sample B Female 27.1
Sample C Male 24.0
Sample D Male 20.0
Dorsal hippocampus
nTPM: 45.3
Samples: 4

Max nTPM: 56.6
Min nTPM: 39.9
Sample A Female 56.6
Sample B Female 43.5
Sample C Male 41.1
Sample D Male 39.9
Entorhinal cortex
nTPM: 18.5
Samples: 4

Max nTPM: 21.0
Min nTPM: 14.7
Sample A Female 18.1
Sample B Female 21.0
Sample C Male 20.2
Sample D Male 14.7
Ventral hippocampus
nTPM: 32.4
Samples: 4

Max nTPM: 36.4
Min nTPM: 25.9
Sample A Female 32.1
Sample B Female 25.9
Sample C Male 35.2
Sample D Male 36.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 31.4
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 6.4
Samples: 4

Max nTPM: 11.5
Min nTPM: 3.5
Sample A Male 5.4
Sample B Male 3.5
Sample C Female 11.5
Sample D Female 5.0
Hippocampal formation
nTPM: 31.4
Samples: 4

Max nTPM: 39.7
Min nTPM: 22.4
Sample A Male 22.4
Sample B Male 32.4
Sample C Female 39.7
Sample D Female 31.1

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 7.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 7.1
356087 Antisense, RP_040617_02_C03, Mouse strain C57BL/6J (56 days, male) 8.7
71608386 Antisense, RP_050927_01_F03, Mouse strain C57BL/6J (56 days, male) 5.6

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