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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:110.2 nTPM
HPA Brain:73.5 nTPM
GTEx:110.2 nTPM
FANTOM5:159.6 Scaled Tags Per Million
Pig:209.5 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

73.5
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 70.3
2048 Male, age 55, midline 92.0
1981 Female, age 72, midline 88.3
2816 Male, age 47, midline 71.9
2194 Female, age 79, both hemispheres 66.7
2565 Male, age 75, midline 32.4
Cervical spinal cord, dorsal horn
nTPM: 73.5
2173 Female, age 72, unknown 100.2
2296 Male, age 66, both hemispheres 96.1
2069 Male, age 47, both hemispheres 72.4
2297 Male, age 75, both hemispheres 71.2
1877 Male, age 55, unknown 59.1
2721 Male, age 90, both hemispheres 42.1
Cervical spinal cord, ventral horn
nTPM: 68.9
2098 Female, age 72, unknown 88.1
2068 Male, age 55, unknown 84.0
2295 Male, age 66, both hemispheres 73.1
2820 Female, age 79, both hemispheres 64.2
2480 Male, age 75, both hemispheres 61.7
2809 Male, age 90, both hemispheres 42.6

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

110.2
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 110.2
Samples: 159

Max nTPM: 287.1
Min nTPM: 18.3
Std nTPM: 53.7
Median nTPM: 106.7
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 287.1
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 283.5
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 270.0
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 254.2
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 233.7
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 224.8
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 208.7
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 206.6
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 204.4
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 197.7
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 195.0
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 192.6
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 187.6
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 185.4
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 185.2
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 176.0
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 174.7
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 172.1
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 171.7
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 165.8
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 165.7
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 164.0
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 162.7
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 162.5
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 160.5
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 160.3
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 158.7
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 157.0
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 156.4
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 155.1
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 154.5
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 153.2
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 152.9
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 148.6
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 147.4
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 147.0
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 145.3
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 144.1
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 143.3
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 141.6
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 140.2
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 137.1
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 136.3
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 136.0
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 134.5
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 134.2
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 134.1
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 134.0
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 133.1
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 132.3
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 131.2
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 130.8
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 129.7
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 127.9
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 126.8
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 126.4
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 126.2
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 125.4
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 123.7
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 123.1
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 122.5
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 121.9
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 120.8
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 119.7
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 119.1
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 118.9
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 118.6
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 118.4
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 116.7
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 115.5
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 115.2
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 114.9
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 113.6
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 113.2
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 109.9
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 109.8
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 109.8
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 109.5
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 107.4
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 106.7
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 106.5
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 104.2
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 103.7
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 103.4
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 102.6
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 99.4
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 99.3
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 99.1
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 98.0
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 98.0
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 97.8
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 97.3
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 97.2
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 93.0
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 92.5
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 90.1
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 90.1
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 90.1
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 89.9
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 85.1
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 85.0
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 84.7
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 84.0
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 83.8
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 82.7
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 82.4
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 81.2
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 80.0
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 79.7
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 78.3
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 77.0
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 76.1
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 76.1
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 74.0
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 71.8
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 71.0
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 70.9
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 70.4
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 69.7
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 69.3
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 68.7
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 67.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 65.3
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 65.3
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 64.0
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 63.1
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 62.8
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 62.7
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 62.3
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 62.0
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 62.0
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 58.2
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 57.9
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 57.5
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 56.1
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 54.6
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 50.5
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 50.0
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 47.0
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 46.9
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 45.7
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 44.5
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 44.3
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 42.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 42.1
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 40.4
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 40.1
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 40.1
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 38.9
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 35.3
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 34.6
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 34.3
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 31.1
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 29.8
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 28.2
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 27.0
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 24.2
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 19.6
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 18.3
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

159.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 159.6
FF:10181-103D1 60 years, female 223.9
FF:10159-103A6 76 years, female 95.3

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

209.5
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 168.1
Samples: 4

Max nTPM: 188.8
Min nTPM: 149.0
Sample A Female 149.0
Sample B Female 188.8
Sample C Male 175.4
Sample D Male 159.2
Ventral spinal cord
nTPM: 209.5
Samples: 4

Max nTPM: 279.0
Min nTPM: 163.9
Sample A Female 201.4
Sample B Female 193.8
Sample C Male 163.9
Sample D Male 279.0

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