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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
33.7
Sample id
Sample description
nTPM
Amygdala nTPM: 30.5
2695
Female, age 67, right hemisphere
33.2
1987
Female, age 91, left hemisphere
31.0
2814
Male, age 76, right hemisphere
30.6
2514
Male, age 75, right hemisphere
29.5
2517
Female, age 94, left hemisphere
28.3
Basal amygdala nTPM: 33.7
2827
Female, age 67, right hemisphere
40.1
2685
Female, age 94, left hemisphere
36.3
2243
Female, age 91, right hemisphere
33.2
2609
Male, age 75, right hemisphere
32.1
1955
Male, age 76, both hemispheres
31.0
2110
Male, age 80, left hemisphere
29.6
Central amygdala nTPM: 30.9
2701
Female, age 91, right hemisphere
37.0
2239
Male, age 80, left hemisphere
31.9
2515
Male, age 75, right hemisphere
30.2
1905
Male, age 76, both hemispheres
28.0
2826
Female, age 94, left hemisphere
27.5
Corticomedial amygdala nTPM: 31.8
2535
Female, age 67, right hemisphere
38.7
2240
Male, age 76, both hemispheres
33.0
2429
Female, age 94, left hemisphere
31.1
2428
Male, age 75, right hemisphere
30.0
2242
Female, age 91, right hemisphere
29.7
2829
Male, age 80, left hemisphere
28.0
Lateral amygdala nTPM: 31.7
2255
Female, age 91, right hemisphere
36.9
2830
Female, age 67, right hemisphere
36.4
2256
Male, age 80, left hemisphere
32.7
2516
Male, age 75, right hemisphere
29.4
2534
Female, age 94, left hemisphere
28.9
1883
Male, age 76, both hemispheres
25.7
AMYGDALA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
14.7
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 14.7
Samples: 152
Max nTPM: 32.2
Min nTPM: 4.9
Std nTPM: 4.1
Median nTPM: 14.2
GTEX-1CB4J-0011-R4b-SM-9WG5P
60-69 years, male
32.2
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
28.8
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
28.0
GTEX-145MI-0011-R4b-SM-5PNZH
60-69 years, female
26.1
GTEX-X4EP-0011-R4B-SM-3P627
60-69 years, female
23.9
GTEX-1JN6P-0011-R4a-SM-EZ6MS
60-69 years, male
23.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
22.6
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
21.8
GTEX-1H2FU-0011-R4a-SM-CL551
60-69 years, female
21.2
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
21.1
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
20.7
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
20.5
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
20.4
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
20.2
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
19.7
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
19.7
GTEX-QMR6-0011-R4A-SM-32PKU
50-59 years, male
19.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
18.8
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
18.8
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
18.7
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
18.7
GTEX-18464-0011-R4a-SM-7LG6T
50-59 years, male
18.2
GTEX-183WM-0011-R4a-SM-7LG6S
70-79 years, female
18.0
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
17.9
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
17.8
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
17.7
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
17.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
17.3
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
17.2
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
17.2
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
17.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
17.0
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
17.0
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
16.9
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
16.9
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
16.8
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
16.7
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
16.7
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
16.6
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
16.6
GTEX-Y8DK-0011-R4A-SM-EXUR1
60-69 years, male
16.5
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
16.4
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
16.3
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
16.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
16.3
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
16.2
GTEX-UTHO-0011-R4A-SM-3GIJP
60-69 years, male
16.2
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
16.1
GTEX-ZE9C-0011-R4a-SM-4WKH6
60-69 years, male
16.1
GTEX-15DDE-0011-R4b-SM-7KULI
50-59 years, female
16.0
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
15.9
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
15.8
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
15.7
GTEX-P44G-0011-R4A-SM-2I3FB
30-39 years, male
15.7
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
15.7
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
15.7
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
15.7
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
15.5
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
15.4
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
15.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
15.1
GTEX-N7MS-0011-R4a-SM-2HMKW
60-69 years, male
15.1
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
14.8
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
14.7
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
14.7
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
14.7
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
14.7
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
14.6
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
14.6
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
14.5
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
14.4
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
14.4
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
14.3
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
14.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
14.3
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
14.2
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
14.2
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
14.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
14.2
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
14.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
14.0
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
14.0
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
14.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
14.0
GTEX-P44H-0011-R4A-SM-2XCEW
40-49 years, male
13.9
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
13.9
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
13.8
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
13.8
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
13.7
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
13.6
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
13.6
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
13.6
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
13.5
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
13.5
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
13.4
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
13.3
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
13.2
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
13.2
GTEX-QDT8-0011-R4A-SM-32PKM
30-39 years, female
13.2
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
13.2
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
13.1
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
13.1
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
13.0
GTEX-R55E-0011-R4A-SM-2TC5H
20-29 years, male
13.0
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
12.9
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
12.8
GTEX-1JJEA-0011-R4a-SM-EXUTC
60-69 years, male
12.8
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
12.7
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
12.7
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
12.6
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
12.5
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
12.5
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
12.4
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
12.4
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
12.3
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
12.3
GTEX-T6MN-0011-R4A-SM-32QPG
50-59 years, male
12.2
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
12.2
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
12.2
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
12.2
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
12.1
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
12.0
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
12.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
12.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
12.0
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
11.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
11.8
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
11.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
11.7
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
11.6
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
11.4
GTEX-T5JC-0011-R4A-SM-32PLT
20-29 years, male
11.2
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
11.2
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
11.0
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
10.9
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
10.5
GTEX-NL3H-0011-R4a-SM-2I3GK
60-69 years, male
10.2
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
10.1
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
10.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
10.0
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
9.9
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
9.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
8.1
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
7.9
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
7.8
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
6.8
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
6.8
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
6.7
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
6.6
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
6.0
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
5.4
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
4.9
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
7.4
Mouse sample
Sample description
nTPM
Amygdala nTPM: 7.4
Samples: 4
Max nTPM: 7.8
Min nTPM: 6.9
Sample A
Male
7.8
Sample B
Male
7.7
Sample C
Female
6.9
Sample D
Female
7.3
AMYGDALA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
