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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:699.4 nTPM
HPA Brain:600.1 nTPM
GTEx:699.4 nTPM
FANTOM5:130.0 Scaled Tags Per Million

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

600.1
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 511.7
2565 Male, age 75, midline 595.0
1981 Female, age 72, midline 554.0
2194 Female, age 79, both hemispheres 525.6
2816 Male, age 47, midline 462.6
2048 Male, age 55, midline 421.1
Cervical spinal cord, dorsal horn
nTPM: 496.8
2173 Female, age 72, unknown 593.6
2296 Male, age 66, both hemispheres 563.6
2069 Male, age 47, both hemispheres 547.9
1877 Male, age 55, unknown 490.9
2297 Male, age 75, both hemispheres 399.9
2721 Male, age 90, both hemispheres 384.7
Cervical spinal cord, ventral horn
nTPM: 600.1
2480 Male, age 75, both hemispheres 789.9
2809 Male, age 90, both hemispheres 774.6
2098 Female, age 72, unknown 622.7
2068 Male, age 55, unknown 528.3
2295 Male, age 66, both hemispheres 516.4
2820 Female, age 79, both hemispheres 368.8

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

699.4
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 699.4
Samples: 159

Max nTPM: 1323.3
Min nTPM: 245.8
Std nTPM: 201.5
Median nTPM: 671.3
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 1323.3
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 1258.0
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 1218.7
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 1188.3
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 1128.3
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 1121.4
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 1108.7
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 1097.7
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 1061.2
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 1042.6
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 1032.4
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 1021.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 1015.3
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 995.2
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 974.6
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 968.4
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 967.8
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 942.9
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 936.5
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 929.5
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 916.3
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 907.7
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 897.3
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 893.3
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 886.1
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 883.6
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 881.8
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 879.6
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 879.6
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 870.9
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 868.7
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 865.8
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 860.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 852.7
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 851.4
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 842.8
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 841.9
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 841.6
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 838.4
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 834.2
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 831.9
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 825.8
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 819.4
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 818.0
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 817.4
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 813.7
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 811.2
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 809.5
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 806.8
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 794.1
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 793.7
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 783.6
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 775.9
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 774.2
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 770.4
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 766.5
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 763.9
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 763.4
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 762.1
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 759.6
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 759.4
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 732.7
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 728.6
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 719.7
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 719.5
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 717.4
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 713.4
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 705.7
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 702.0
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 695.5
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 693.8
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 689.3
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 686.3
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 686.1
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 683.8
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 682.5
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 679.6
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 678.9
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 677.6
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 671.3
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 665.4
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 665.2
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 664.5
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 664.1
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 663.7
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 662.3
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 657.8
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 653.5
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 647.9
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 647.4
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 646.8
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 642.6
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 641.5
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 639.1
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 636.3
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 632.7
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 627.1
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 622.3
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 615.5
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 611.6
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 610.9
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 609.8
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 606.5
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 603.4
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 602.4
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 600.1
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 596.5
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 593.1
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 592.2
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 588.6
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 587.3
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 587.1
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 582.9
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 574.7
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 573.3
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 569.6
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 561.8
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 558.5
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 558.2
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 557.7
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 557.6
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 552.2
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 550.0
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 545.5
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 540.4
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 535.6
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 521.0
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 519.9
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 509.0
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 505.4
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 504.1
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 502.0
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 496.9
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 487.4
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 485.1
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 478.8
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 476.9
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 475.0
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 474.7
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 472.2
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 466.6
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 464.8
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 462.8
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 458.4
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 454.4
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 446.6
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 441.6
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 439.8
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 435.9
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 435.1
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 431.8
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 404.6
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 398.8
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 393.8
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 378.4
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 356.8
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 354.6
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 303.2
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 245.8
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

130.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 130.0
FF:10181-103D1 60 years, female 134.9
FF:10159-103A6 76 years, female 125.1

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