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TISSUE AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
Dictionary
Tissue proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:383.3 nTPM
HPA Brain:223.0 nTPM
GTEx:383.3 nTPM
FANTOM5:318.9 Scaled Tags Per Million
Pig:212.9 nTPM
Mouse:104.3 nTPM
Allen mouse:16.1 Expression energy

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

223.0
Sample id Sample description nTPM
Amygdala
nTPM: 108.2
2517 Female, age 94, left hemisphere 157.4
2514 Male, age 75, right hemisphere 107.4
2814 Male, age 76, right hemisphere 96.5
2695 Female, age 67, right hemisphere 96.4
1987 Female, age 91, left hemisphere 83.2
Basal amygdala
nTPM: 223.0
2827 Female, age 67, right hemisphere 310.7
2243 Female, age 91, right hemisphere 238.8
2110 Male, age 80, left hemisphere 229.4
2685 Female, age 94, left hemisphere 223.1
2609 Male, age 75, right hemisphere 202.0
1955 Male, age 76, both hemispheres 134.0
Central amygdala
nTPM: 150.1
2826 Female, age 94, left hemisphere 316.2
2239 Male, age 80, left hemisphere 173.5
2515 Male, age 75, right hemisphere 100.8
1905 Male, age 76, both hemispheres 82.8
2701 Female, age 91, right hemisphere 77.4
Corticomedial amygdala
nTPM: 212.0
2535 Female, age 67, right hemisphere 322.3
2829 Male, age 80, left hemisphere 261.9
2428 Male, age 75, right hemisphere 189.2
2242 Female, age 91, right hemisphere 185.2
2429 Female, age 94, left hemisphere 158.3
2240 Male, age 76, both hemispheres 155.4
Lateral amygdala
nTPM: 187.6
2534 Female, age 94, left hemisphere 290.1
2830 Female, age 67, right hemisphere 236.6
2256 Male, age 80, left hemisphere 211.5
2516 Male, age 75, right hemisphere 150.7
2255 Female, age 91, right hemisphere 119.0
1883 Male, age 76, both hemispheres 118.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

383.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 383.3
Samples: 152

Max nTPM: 1510.6
Min nTPM: 26.5
Std nTPM: 174.0
Median nTPM: 366.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1510.6
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 846.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 779.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 770.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 742.7
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 729.6
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 727.8
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 685.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 677.7
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 664.0
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 647.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 634.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 628.7
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 587.5
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 567.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 567.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 558.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 547.7
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 546.7
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 542.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 538.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 531.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 522.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 520.3
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 518.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 508.0
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 504.7
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 502.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 500.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 495.7
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 483.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 482.8
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 473.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 472.8
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 470.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 465.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 463.3
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 461.0
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 457.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 457.4
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 456.2
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 454.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 449.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 448.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 441.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 439.6
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 437.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 436.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 434.9
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 428.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 426.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 426.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 425.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 423.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 409.6
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 409.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 402.6
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 402.3
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 398.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 397.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 393.1
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 391.1
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 388.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 384.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 383.8
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 382.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 382.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 380.9
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 379.8
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 379.5
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 379.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 375.4
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 373.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 372.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 369.7
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 367.1
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 365.9
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 365.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 362.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 358.2
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 353.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 353.2
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 346.4
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 345.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 340.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 340.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 337.5
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 334.6
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 334.2
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 333.6
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 333.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 331.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 328.7
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 315.1
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 313.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 312.4
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 312.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 309.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 307.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 305.3
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 300.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 298.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 296.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 296.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 294.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 293.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 288.1
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 286.7
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 285.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 281.8
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 278.7
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 277.0
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 272.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 264.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 256.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 253.7
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 250.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 249.9
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 248.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 243.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 242.0
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 240.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 237.1
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 235.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 234.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 234.6
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 229.6
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 229.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 227.0
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 226.6
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 225.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 218.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 218.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 218.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 213.3
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 209.9
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 209.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 200.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 194.1
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 190.6
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 190.1
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 186.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 184.5
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 180.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 175.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 175.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 168.3
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 165.7
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 157.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 147.9
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 91.2
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 26.5
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

318.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 318.9
FF:10151-102I7 76 years, female 318.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

212.9
Pig sample Sample description nTPM
Amygdala
nTPM: 212.9
Samples: 4

Max nTPM: 286.9
Min nTPM: 174.3
Sample A Female 286.9
Sample B Female 174.3
Sample C Male 211.8
Sample D Male 178.4

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

104.3
Mouse sample Sample description nTPM
Amygdala
nTPM: 104.4
Samples: 4

Max nTPM: 128.4
Min nTPM: 94.8
Sample A Male 94.8
Sample B Male 96.5
Sample C Female 128.4
Sample D Female 97.7

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

16.1
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 16.1
68797501 Antisense, RP_050125_02_E12, Mouse strain C57BL/6J (56 days, male) 16.1

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