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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:40.7 nTPM
HPA Brain:102.8 nTPM
GTEx:40.7 nTPM
FANTOM5:119.5 Scaled Tags Per Million
Pig:159.4 nTPM
Mouse:163.5 nTPM
Allen mouse:10.2 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

102.8
Sample id Sample description nTPM
Amygdala
nTPM: 76.1
2814 Male, age 76, right hemisphere 113.8
1987 Female, age 91, left hemisphere 94.4
2517 Female, age 94, left hemisphere 64.9
2514 Male, age 75, right hemisphere 58.2
2695 Female, age 67, right hemisphere 49.0
Basal amygdala
nTPM: 90.0
2243 Female, age 91, right hemisphere 116.6
2110 Male, age 80, left hemisphere 104.6
1955 Male, age 76, both hemispheres 104.4
2685 Female, age 94, left hemisphere 99.5
2609 Male, age 75, right hemisphere 58.8
2827 Female, age 67, right hemisphere 56.1
Central amygdala
nTPM: 87.8
2239 Male, age 80, left hemisphere 111.8
1905 Male, age 76, both hemispheres 106.6
2701 Female, age 91, right hemisphere 95.7
2515 Male, age 75, right hemisphere 63.3
2826 Female, age 94, left hemisphere 61.4
Corticomedial amygdala
nTPM: 102.8
2429 Female, age 94, left hemisphere 122.0
2829 Male, age 80, left hemisphere 121.1
2242 Female, age 91, right hemisphere 120.7
2240 Male, age 76, both hemispheres 104.5
2535 Female, age 67, right hemisphere 79.4
2428 Male, age 75, right hemisphere 69.4
Lateral amygdala
nTPM: 77.3
1883 Male, age 76, both hemispheres 126.3
2534 Female, age 94, left hemisphere 88.8
2255 Female, age 91, right hemisphere 76.6
2256 Male, age 80, left hemisphere 74.5
2516 Male, age 75, right hemisphere 61.5
2830 Female, age 67, right hemisphere 36.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

40.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 40.7
Samples: 152

Max nTPM: 99.6
Min nTPM: 1.8
Std nTPM: 20.7
Median nTPM: 36.8
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 99.6
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 97.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 93.8
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 91.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 84.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 83.3
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 80.4
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 79.3
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 79.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 78.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 75.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 73.6
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 71.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 70.6
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 70.0
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 69.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 69.3
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 66.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 65.9
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 65.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 64.3
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 64.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 63.8
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 62.5
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 62.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 61.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 61.0
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 59.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 58.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 58.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 58.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 57.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 57.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 57.1
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 56.9
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 56.8
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 55.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 54.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 54.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 54.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 53.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 52.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 52.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 52.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 50.6
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 50.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 50.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 50.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 49.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 48.3
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 47.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 47.0
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 46.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 46.5
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 45.7
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 45.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 45.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 44.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 43.8
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 43.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 42.9
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 42.9
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 42.6
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 42.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 41.5
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 41.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 41.0
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 40.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 40.8
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 40.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 39.8
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 38.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 38.7
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 37.4
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 37.3
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 37.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 36.6
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 36.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 36.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 36.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 36.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 36.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 36.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 35.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 35.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 34.5
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 34.2
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 34.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 33.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 33.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 33.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 33.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 33.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 32.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 32.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 32.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 32.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 32.2
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 30.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 30.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 29.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 29.1
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 28.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 28.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 27.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 27.6
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 27.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 26.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 26.3
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 24.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 24.6
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 24.3
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 24.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 24.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 23.9
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 23.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 23.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 23.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 22.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 22.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 22.0
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 21.5
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 21.3
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 21.2
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 20.6
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 20.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 20.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 19.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 19.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 19.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 19.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 19.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 18.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 18.3
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 18.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 17.2
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 16.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 16.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 15.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 15.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 14.5
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 13.5
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 13.2
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 12.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 11.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 11.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 10.3
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 9.1
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 8.9
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 6.7
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 4.4
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 1.8
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

119.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 119.5
FF:10151-102I7 76 years, female 119.5

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

159.4
Pig sample Sample description nTPM
Amygdala
nTPM: 159.4
Samples: 4

Max nTPM: 223.5
Min nTPM: 109.7
Sample A Female 223.5
Sample B Female 109.7
Sample C Male 148.6
Sample D Male 155.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

163.5
Mouse sample Sample description nTPM
Amygdala
nTPM: 163.5
Samples: 4

Max nTPM: 171.9
Min nTPM: 155.8
Sample A Male 171.9
Sample B Male 155.8
Sample C Female 161.8
Sample D Female 164.3

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

10.2
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 10.2
984 Antisense, RP_040227_01_05, Mouse strain C57BL/6J (56 days, male) 10.2
985 Antisense, RP_040227_01_05, Mouse strain C57BL/6J (56 days, male) 4.2

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