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BRAIN MEDULLA OBLONGATA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Medulla oblongata
MEDULLA OBLONGATA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:213.8 nTPM
FANTOM5:171.7 Scaled Tags Per Million
Pig:137.9 nTPM
Allen mouse:1.6 Expression energy

MEDULLA OBLONGATA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

213.8
Sample id Sample description nTPM
Area postrema
nTPM: 107.6
2306 Male, age 80, both hemispheres 148.3
2799 Male, age 61, both hemispheres 111.1
2054 Male, age 76, both hemispheres 63.4
Dorsal medullary reticular nucleus
nTPM: 116.8
2373 Male, age 61, both hemispheres 124.1
2040 Female, age 85, both hemispheres 123.8
2088 Male, age 76, both hemispheres 102.4
Dorsal motor vagal complex
nTPM: 81.2
2185 Male, age 76, both hemispheres 119.1
2000 Male, age 74, unknown 90.3
2797 Male, age 61, both hemispheres 82.5
2133 Female, age 91, both hemispheres 80.4
2807 Female, age 85, both hemispheres 80.1
2643 Male, age 74, both hemispheres 70.1
2813 Female, age 72, unknown 67.3
2844 Male, age 55, unknown 60.0
Gigantocellular reticular nuclei, medullary
nTPM: 120.0
2314 Male, age 61, both hemispheres 186.8
2387 Female, age 91, both hemispheres 145.4
1876 Female, age 85, both hemispheres 142.3
2310 Male, age 80, both hemispheres 100.6
2022 Male, age 76, right hemisphere 77.0
2462 Male, age 74, both hemispheres 68.0
Gigantocellular reticular nuclei, pars
nTPM: 99.4
2336 Male, age 61, both hemispheres 111.6
2706 Male, age 80, both hemispheres 108.4
2330 Male, age 80, both hemispheres 104.9
2084 Female, age 85, both hemispheres 91.3
2168 Male, age 76, both hemispheres 80.9
Inferior olive
nTPM: 151.9
2178 Male, age 61, both hemispheres 187.9
2085 Female, age 85, both hemispheres 153.6
2563 Male, age 74, both hemispheres 151.3
2379 Male, age 80, both hemispheres 142.9
2628 Female, age 91, both hemispheres 124.0
Lateral medullary reticular nucleus
nTPM: 153.7
2852 Male, age 80, both hemispheres 197.3
2374 Male, age 61, both hemispheres 164.0
2305 Male, age 74, both hemispheres 162.9
2190 Female, age 85, both hemispheres 156.7
2804 Female, age 91, both hemispheres 122.9
2044 Male, age 76, both hemispheres 118.6
Medial olivary nucleus
nTPM: 188.3
1943 Male, age 61, both hemispheres 241.9
1962 Male, age 76, both hemispheres 227.7
2851 Male, age 80, both hemispheres 143.6
2138 Female, age 91, both hemispheres 139.8
Medial vestibular nucleus
nTPM: 108.9
2801 Male, age 74, both hemispheres 141.0
2803 Female, age 91, both hemispheres 138.4
2093 Male, age 80, both hemispheres 125.4
2624 Male, age 61, both hemispheres 105.8
2743 Female, age 85, both hemispheres 91.7
2134 Male, age 76, both hemispheres 50.9
Motor hypoglossal nucleus
nTPM: 107.3
2182 Male, age 80, both hemispheres 156.7
2125 Female, age 91, both hemispheres 144.7
2132 Female, age 85, both hemispheres 136.0
2461 Male, age 61, both hemispheres 60.7
2277 Male, age 76, both hemispheres 38.6
Nucleus ambiguus
nTPM: 159.9
2071 Male, age 76, both hemispheres 229.5
2096 Female, age 85, both hemispheres 90.3
Nucleus cuneatus
nTPM: 136.6
2380 Male, age 80, both hemispheres 198.4
2808 Female, age 85, both hemispheres 178.9
2381 Male, age 80, both hemispheres 171.3
2376 Male, age 61, both hemispheres 143.5
2100 Male, age 76, both hemispheres 142.4
2564 Male, age 74, both hemispheres 115.1
2131 Male, age 76, both hemispheres 106.9
2805 Female, age 91, both hemispheres 87.7
2562 Male, age 61, both hemispheres 85.3
Nucleus gracilis
nTPM: 161.0
2382 Male, age 80, both hemispheres 211.9
2627 Male, age 74, both hemispheres 141.7
2299 Female, age 85, both hemispheres 129.5
Nucleus raphe obscurus
nTPM: 213.8
2845 Female, age 85, midline 251.8
2142 Male, age 76, midline 210.8
2800 Male, age 61, midline 178.7
Nucleus raphe pallidus
nTPM: 184.8
2145 Male, age 76, midline 220.5
1924 Male, age 61, midline 201.9
2183 Male, age 80, midline 131.9
Nucleus tractus solitarii
nTPM: 53.4
2307 Male, age 80, both hemispheres 56.2
2191 Female, age 85, both hemispheres 53.0
2656 Male, age 76, both hemispheres 52.8
2144 Female, age 91, right hemisphere 51.3
Parvicellular reticular nuclei
nTPM: 108.7
2095 Male, age 76, both hemispheres 127.5
2119 Male, age 80, both hemispheres 125.5
2558 Male, age 74, both hemispheres 73.2
Parvicellular reticular nuclei, medullary
nTPM: 96.5
2189 Female, age 91, both hemispheres 107.7
2091 Female, age 85, both hemispheres 95.6
2181 Male, age 80, left hemisphere 86.1
Peritrigeminal nucleus
nTPM: 138.9
2067 Female, age 85, both hemispheres 154.4
2136 Male, age 76, both hemispheres 139.9
2179 Male, age 61, both hemispheres 122.4
Prepositus hypoglossal nucleus
nTPM: 135.1
2855 Female, age 85, right hemisphere 181.4
2086 Male, age 80, both hemispheres 88.7
Spinal trigeminal nucleus, caudal
nTPM: 119.2
2312 Male, age 61, both hemispheres 145.1
2447 Male, age 76, both hemispheres 127.5
2308 Male, age 80, both hemispheres 127.3
2390 Female, age 91, both hemispheres 102.8
2642 Male, age 74, both hemispheres 93.3
Spinal trigeminal nucleus, interpolar
nTPM: 93.5
2386 Female, age 85, both hemispheres 109.0
2033 Male, age 80, both hemispheres 107.2
2389 Female, age 91, both hemispheres 102.7
2066 Male, age 76, right hemisphere 84.7
2625 Male, age 61, both hemispheres 63.6
Spinal vestibular nucleus
nTPM: 119.1
2748 Male, age 76, both hemispheres 158.2
2806 Female, age 85, both hemispheres 136.5
2186 Female, age 91, both hemispheres 113.9
2384 Male, age 74, both hemispheres 109.7
2780 Male, age 80, both hemispheres 108.7
2796 Male, age 61, both hemispheres 87.4
Superior vestibular nucleus
nTPM: 96.2
2015 Male, age 80, both hemispheres 112.1
2061 Male, age 76, both hemispheres 99.2
2383 Male, age 74, both hemispheres 77.2
Ventral medullary reticular nucleus
nTPM: 151.1
2372 Male, age 61, both hemispheres 169.3
2060 Male, age 76, both hemispheres 133.0
Ventrolateral medulla, A1-C1 cell groups
nTPM: 132.7
2118 Male, age 80, both hemispheres 164.2
2180 Male, age 61, both hemispheres 152.1
1986 Male, age 76, both hemispheres 123.8
2741 Female, age 85, both hemispheres 121.3
2302 Female, age 91, both hemispheres 102.0

MEDULLA OBLONGATA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

171.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Medulla oblongata
Scaled Tags Per Million: 171.7
FF:10038-101F2 18-64 years, mixed 250.8
FF:10174-103C3 60 years, female 145.8
FF:10155-103A2 76 years, female 118.5

MEDULLA OBLONGATA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

137.9
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 137.9
Samples: 4

Max nTPM: 176.4
Min nTPM: 85.6
Sample A Female 144.1
Sample B Female 85.6
Sample C Male 145.4
Sample D Male 176.4

MEDULLA OBLONGATA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

1.6
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 1.6
69671989 Antisense, RP_050428_02_G06, Mouse strain C57BL/6J (56 days, male) 2.1
74882527 Antisense, RP_060315_04_E12, Mouse strain C57BL/6J (56 days, male) 1.1

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