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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:344.9 nTPM
HPA Brain:133.3 nTPM
GTEx:344.9 nTPM
FANTOM5:222.1 Scaled Tags Per Million
Pig:165.0 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

133.3
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 109.8
1981 Female, age 72, midline 153.7
2816 Male, age 47, midline 109.2
2048 Male, age 55, midline 108.3
2194 Female, age 79, both hemispheres 107.0
2565 Male, age 75, midline 70.9
Cervical spinal cord, dorsal horn
nTPM: 133.3
2296 Male, age 66, both hemispheres 232.1
2173 Female, age 72, unknown 216.5
2069 Male, age 47, both hemispheres 130.9
1877 Male, age 55, unknown 111.3
2721 Male, age 90, both hemispheres 58.8
2297 Male, age 75, both hemispheres 49.9
Cervical spinal cord, ventral horn
nTPM: 129.0
2068 Male, age 55, unknown 161.0
2098 Female, age 72, unknown 158.0
2820 Female, age 79, both hemispheres 121.4
2809 Male, age 90, both hemispheres 113.4
2295 Male, age 66, both hemispheres 113.0
2480 Male, age 75, both hemispheres 107.4

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

344.9
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 344.9
Samples: 159

Max nTPM: 888.6
Min nTPM: 68.6
Std nTPM: 147.7
Median nTPM: 325.5
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 888.6
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 771.8
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 759.4
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 734.3
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 725.5
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 710.2
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 683.6
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 641.4
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 607.0
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 598.1
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 591.4
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 549.9
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 540.7
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 538.4
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 523.4
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 512.0
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 510.9
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 502.8
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 501.6
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 499.5
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 494.4
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 492.1
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 488.5
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 480.4
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 472.9
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 471.9
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 470.0
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 468.0
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 460.1
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 452.3
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 451.3
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 450.7
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 443.7
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 442.6
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 438.8
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 438.2
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 430.5
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 428.5
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 428.2
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 426.8
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 423.8
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 423.2
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 422.2
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 417.4
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 414.0
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 413.7
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 412.9
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 412.5
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 408.1
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 406.6
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 399.1
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 397.7
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 396.7
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 396.6
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 396.5
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 394.1
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 390.4
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 384.6
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 383.2
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 378.8
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 377.3
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 370.8
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 369.2
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 366.0
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 363.9
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 360.1
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 359.9
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 359.0
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 357.0
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 355.4
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 354.8
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 339.6
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 339.2
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 338.8
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 335.8
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 332.5
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 331.2
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 329.1
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 326.1
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 325.5
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 318.9
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 316.2
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 314.5
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 312.5
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 312.4
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 312.2
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 311.5
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 309.9
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 309.4
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 305.8
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 304.6
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 303.8
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 302.0
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 301.7
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 301.2
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 300.7
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 294.1
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 292.2
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 291.7
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 286.6
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 281.9
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 280.6
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 279.3
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 279.2
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 279.0
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 274.3
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 272.4
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 270.1
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 266.2
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 265.7
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 264.8
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 262.8
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 259.7
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 258.4
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 258.2
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 257.7
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 257.5
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 251.0
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 245.0
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 243.0
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 242.3
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 241.9
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 241.3
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 234.0
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 232.4
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 232.2
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 227.4
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 223.4
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 222.8
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 222.5
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 219.2
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 218.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 216.3
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 216.1
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 208.7
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 204.2
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 193.7
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 188.8
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 186.1
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 177.8
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 172.8
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 171.1
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 169.6
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 165.0
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 155.2
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 155.0
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 152.0
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 149.0
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 140.7
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 127.5
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 123.4
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 123.0
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 117.9
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 117.2
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 102.0
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 95.9
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 94.9
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 91.5
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 68.6
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

222.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 222.1
FF:10181-103D1 60 years, female 312.2
FF:10159-103A6 76 years, female 132.0

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

165.0
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 149.4
Samples: 4

Max nTPM: 158.8
Min nTPM: 137.3
Sample A Female 137.3
Sample B Female 148.7
Sample C Male 158.8
Sample D Male 152.7
Ventral spinal cord
nTPM: 165.0
Samples: 4

Max nTPM: 203.4
Min nTPM: 141.0
Sample A Female 173.2
Sample B Female 141.0
Sample C Male 142.5
Sample D Male 203.4

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