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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:594.1 nTPM
HPA Brain:229.2 nTPM
GTEx:594.1 nTPM
FANTOM5:161.6 Scaled Tags Per Million
Pig:79.3 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

229.2
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 184.5
2816 Male, age 47, midline 216.1
1981 Female, age 72, midline 210.5
2194 Female, age 79, both hemispheres 186.1
2048 Male, age 55, midline 165.5
2565 Male, age 75, midline 144.4
Cervical spinal cord, dorsal horn
nTPM: 201.0
2296 Male, age 66, both hemispheres 381.5
2173 Female, age 72, unknown 286.8
2069 Male, age 47, both hemispheres 207.3
1877 Male, age 55, unknown 151.3
2721 Male, age 90, both hemispheres 107.3
2297 Male, age 75, both hemispheres 71.6
Cervical spinal cord, ventral horn
nTPM: 229.2
2480 Male, age 75, both hemispheres 248.7
2098 Female, age 72, unknown 243.0
2820 Female, age 79, both hemispheres 239.2
2068 Male, age 55, unknown 234.3
2809 Male, age 90, both hemispheres 206.0
2295 Male, age 66, both hemispheres 204.2

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

594.1
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 594.1
Samples: 159

Max nTPM: 1334.0
Min nTPM: 106.9
Std nTPM: 272.2
Median nTPM: 550.5
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 1334.0
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 1215.8
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 1192.8
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 1180.1
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 1159.4
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 1108.5
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 1098.2
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 1079.2
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 1071.3
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 1059.6
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 1054.4
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 1054.1
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 1050.7
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 1050.1
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 1042.6
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 1026.2
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 1016.5
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 1009.6
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 1007.9
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 997.0
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 992.6
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 946.1
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 923.0
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 917.0
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 915.2
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 912.5
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 891.2
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 881.5
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 878.5
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 867.4
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 825.1
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 824.6
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 817.8
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 814.4
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 813.7
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 786.0
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 767.8
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 767.6
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 761.3
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 761.3
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 753.6
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 753.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 753.3
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 748.3
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 745.1
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 738.9
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 738.7
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 738.5
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 729.3
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 726.3
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 721.3
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 710.6
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 708.1
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 705.2
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 703.9
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 684.3
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 681.9
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 678.3
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 677.3
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 673.0
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 670.1
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 661.0
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 652.7
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 648.3
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 648.1
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 640.8
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 633.4
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 631.0
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 622.9
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 612.2
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 603.2
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 596.7
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 595.9
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 585.2
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 578.1
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 570.3
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 564.3
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 562.5
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 557.6
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 550.5
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 541.9
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 534.6
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 534.0
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 526.0
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 519.5
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 516.7
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 515.5
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 514.6
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 511.0
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 494.3
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 476.9
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 469.4
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 468.5
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 463.5
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 463.5
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 463.4
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 460.8
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 451.1
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 447.6
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 440.4
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 439.7
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 436.2
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 435.0
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 430.9
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 428.1
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 425.7
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 425.4
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 415.2
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 413.4
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 411.5
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 410.1
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 407.8
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 406.5
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 393.2
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 393.0
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 392.4
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 388.3
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 386.4
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 385.0
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 375.3
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 375.2
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 371.5
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 368.6
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 362.8
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 362.3
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 359.9
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 359.2
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 354.3
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 351.7
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 347.0
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 340.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 328.3
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 327.7
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 321.8
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 321.4
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 319.4
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 311.3
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 307.1
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 305.4
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 304.0
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 303.7
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 299.0
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 295.2
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 290.0
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 281.2
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 279.9
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 275.8
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 254.1
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 251.3
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 244.2
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 239.0
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 220.3
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 190.5
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 179.5
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 139.7
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 138.7
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 120.9
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 117.9
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 106.9
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

161.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 161.6
FF:10181-103D1 60 years, female 216.3
FF:10159-103A6 76 years, female 107.0

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

79.3
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 67.6
Samples: 4

Max nTPM: 79.1
Min nTPM: 54.1
Sample A Female 79.1
Sample B Female 59.9
Sample C Male 54.1
Sample D Male 77.3
Ventral spinal cord
nTPM: 79.3
Samples: 4

Max nTPM: 94.3
Min nTPM: 66.4
Sample A Female 94.3
Sample B Female 66.4
Sample C Male 71.5
Sample D Male 85.1

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