We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
RHOA
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • RHOA
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:188.4 nTPM
FANTOM5:313.7 Scaled Tags Per Million
Pig:183.9 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody CAB005052
Glial cells Medium



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

188.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 188.4
Samples: 246

Max nTPM: 333.5
Min nTPM: 121.1
Std nTPM: 42.7
Median nTPM: 179.3
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 333.5
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 327.6
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 321.6
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 311.9
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 303.2
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 294.4
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 288.8
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 284.1
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 277.1
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 271.7
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 271.3
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 270.6
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 263.5
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 263.2
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 258.5
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 257.0
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 254.6
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 254.0
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 252.9
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 252.3
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 251.1
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 247.7
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 247.6
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 246.9
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 245.0
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 244.0
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 241.9
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 241.2
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 240.5
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 239.8
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 239.5
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 239.4
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 239.0
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 236.9
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 236.0
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 233.5
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 233.2
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 233.2
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 232.5
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 231.5
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 230.1
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 229.9
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 228.1
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 227.8
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 227.4
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 225.6
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 225.1
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 224.2
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 223.8
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 222.9
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 222.6
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 222.1
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 220.7
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 220.7
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 218.9
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 218.3
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 218.1
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 217.7
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 217.6
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 217.5
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 217.4
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 216.8
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 216.6
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 215.8
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 214.6
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 214.5
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 214.3
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 214.1
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 213.8
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 213.1
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 213.0
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 212.7
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 212.6
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 212.0
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 211.5
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 211.1
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 209.7
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 209.6
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 207.7
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 207.1
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 206.4
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 205.3
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 205.0
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 204.7
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 204.4
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 204.4
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 202.6
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 201.8
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 201.4
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 199.4
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 198.7
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 198.5
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 198.5
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 197.5
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 196.8
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 195.6
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 193.6
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 193.0
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 192.6
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 192.5
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 190.6
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 190.3
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 190.0
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 189.8
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 187.7
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 187.6
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 187.4
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 186.3
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 186.3
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 185.9
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 185.9
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 185.7
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 185.6
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 185.0
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 184.0
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 184.0
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 183.0
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 182.4
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 182.0
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 181.1
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 180.7
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 179.6
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 179.3
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 179.3
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 179.0
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 178.6
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 178.6
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 177.9
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 177.5
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 176.9
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 176.7
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 176.7
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 176.7
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 175.9
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 175.7
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 175.7
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 174.9
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 174.6
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 174.6
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 173.0
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 172.4
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 172.1
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 171.2
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 170.6
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 170.5
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 169.6
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 169.0
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 168.7
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 168.4
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 167.1
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 166.6
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 166.5
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 165.3
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 165.1
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 165.0
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 164.8
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 164.6
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 164.0
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 163.6
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 163.2
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 162.2
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 162.1
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 162.1
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 161.1
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 160.5
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 159.9
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 159.9
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 159.2
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 158.6
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 157.9
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 157.8
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 157.7
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 157.6
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 157.6
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 156.2
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 156.2
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 156.0
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 155.4
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 154.9
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 154.8
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 154.6
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 154.4
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 154.4
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 154.3
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 154.2
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 154.2
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 154.0
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 153.9
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 153.8
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 153.7
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 153.6
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 153.6
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 153.4
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 153.3
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 152.4
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 152.3
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 151.9
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 151.9
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 151.7
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 151.7
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 150.2
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 150.2
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 150.0
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 149.1
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 148.3
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 148.2
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 146.9
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 146.6
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 146.5
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 146.4
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 146.3
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 145.9
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 145.9
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 145.2
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 145.1
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 144.5
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 144.4
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 144.3
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 143.8
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 143.2
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 143.2
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 142.9
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 142.7
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 142.1
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 141.7
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 140.0
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 139.4
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 136.5
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 135.6
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 134.9
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 134.1
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 133.6
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 133.0
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 132.8
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 131.9
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 131.4
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 130.8
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 130.3
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 128.5
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 127.5
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 123.1
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 122.7
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 122.2
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 121.7
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 121.3
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 121.1
Show allShow less

CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

313.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 313.7
FF:10164-103B2 76 years, female 313.7

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

183.9
Pig sample Sample description nTPM
Caudate
nTPM: 183.9
Samples: 4

Max nTPM: 200.6
Min nTPM: 167.7
Sample A Female 187.4
Sample B Female 179.7
Sample C Male 200.6
Sample D Male 167.7

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org