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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:267.9 nTPM
HPA:267.9 nTPM
GTEx:242.0 nTPM
FANTOM5:784.1 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody CAB005052
Glandular cells Low



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

267.9
overview
Male, age 65
Small intestine sample 232
nTPM: 242.8
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 278.8
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 261.5
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 288.6

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

242.0
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 242.0
Samples: 187

Max nTPM: 655.8
Min nTPM: 168.9
Std nTPM: 47.7
Median nTPM: 239.1
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 655.8
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 341.3
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 339.8
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 337.3
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 327.6
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 325.6
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 319.4
GTEX-117YX-0326-SM-5GICL 50-59 years, male 318.9
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 315.5
GTEX-14PK6-1626-SM-6871I 70-79 years, female 313.4
GTEX-1192X-2526-SM-59868 50-59 years, male 312.2
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 311.7
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 309.7
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 306.2
GTEX-YFCO-1326-SM-664NV 40-49 years, male 303.1
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 301.1
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 291.8
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 284.0
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 283.4
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 283.0
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 282.8
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 281.6
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 281.2
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 280.6
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 280.1
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 279.2
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 277.1
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 276.8
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 276.4
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 276.0
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 274.9
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 274.1
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 273.6
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 271.9
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 271.6
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 268.8
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 268.2
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 267.6
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 266.0
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 265.2
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 265.1
GTEX-1122O-1326-SM-5H11F 60-69 years, female 264.6
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 264.6
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 264.2
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 263.9
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 263.7
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 263.1
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 263.1
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 262.9
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 262.7
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 262.6
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 262.3
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 262.3
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 262.2
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 262.2
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 261.9
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 261.0
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 260.5
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 259.6
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 259.3
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 259.1
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 258.7
GTEX-111YS-1426-SM-5GID8 60-69 years, male 257.5
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 257.4
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 257.4
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 255.8
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 254.6
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 254.5
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 253.5
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 253.3
GTEX-14PKU-1626-SM-6871C 40-49 years, female 252.9
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 252.9
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 252.6
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 252.4
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 251.9
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 248.5
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 247.0
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 246.2
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 246.2
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 246.1
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 246.0
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 245.7
GTEX-13111-1426-SM-5DUW3 50-59 years, male 245.0
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 243.0
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 242.7
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 242.4
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 242.1
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 242.1
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 241.1
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 241.0
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 240.0
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 239.9
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 239.6
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 239.1
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 236.4
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 235.9
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 235.1
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 233.2
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 232.2
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 231.9
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 231.5
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 230.8
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 229.7
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 229.7
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 229.6
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 229.1
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 229.0
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 228.9
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 228.9
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 228.0
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 227.3
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 225.7
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 225.5
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 225.2
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 224.9
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 224.9
GTEX-1C475-1426-SM-793CH 40-49 years, female 223.5
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 222.4
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 222.2
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 221.8
GTEX-183FY-1626-SM-793D8 20-29 years, male 221.7
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 221.3
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 221.0
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 218.4
GTEX-144GM-1026-SM-79OKU 20-29 years, male 217.9
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 217.7
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 217.7
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 217.0
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 216.9
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 216.7
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 216.6
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 215.3
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 214.7
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 214.6
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 214.5
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 214.2
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 213.7
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 213.7
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 212.3
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 212.3
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 212.2
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 210.1
GTEX-14PN3-2026-SM-68729 60-69 years, female 210.0
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 207.5
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 207.1
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 205.6
GTEX-ZTSS-0926-SM-59865 40-49 years, male 205.3
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 205.1
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 205.0
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 205.0
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 204.8
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 204.7
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 204.0
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 204.0
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 203.9
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 203.6
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 203.1
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 203.0
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 201.8
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 201.8
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 200.7
GTEX-13113-1226-SM-5EGHT 60-69 years, female 199.9
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 199.8
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 199.7
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 199.2
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 197.4
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 196.2
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 196.0
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 195.0
GTEX-13O61-1326-SM-5KM31 60-69 years, male 194.8
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 192.7
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 192.7
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 192.0
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 191.7
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 188.3
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 188.2
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 187.5
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 187.4
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 187.2
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 185.9
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 185.5
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 181.2
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 180.6
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 174.3
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 172.2
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 169.1
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 168.9
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

784.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 784.1
FF:10024-101D6 15,40,85 years, mixed 784.1

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