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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
386.8
Sample id
Sample description
nTPM
Amygdala nTPM: 282.5
2814
Male, age 76, right hemisphere
442.5
1987
Female, age 91, left hemisphere
303.1
2514
Male, age 75, right hemisphere
241.8
2517
Female, age 94, left hemisphere
231.6
2695
Female, age 67, right hemisphere
193.4
Basal amygdala nTPM: 366.8
2110
Male, age 80, left hemisphere
549.9
2243
Female, age 91, right hemisphere
502.7
2685
Female, age 94, left hemisphere
379.3
1955
Male, age 76, both hemispheres
370.9
2827
Female, age 67, right hemisphere
227.0
2609
Male, age 75, right hemisphere
170.9
Central amygdala nTPM: 321.8
1905
Male, age 76, both hemispheres
433.8
2701
Female, age 91, right hemisphere
374.1
2239
Male, age 80, left hemisphere
363.6
2826
Female, age 94, left hemisphere
247.8
2515
Male, age 75, right hemisphere
189.6
Corticomedial amygdala nTPM: 386.8
2535
Female, age 67, right hemisphere
513.4
2829
Male, age 80, left hemisphere
431.1
2242
Female, age 91, right hemisphere
428.6
2240
Male, age 76, both hemispheres
387.8
2429
Female, age 94, left hemisphere
374.1
2428
Male, age 75, right hemisphere
185.7
Lateral amygdala nTPM: 286.9
1883
Male, age 76, both hemispheres
446.7
2534
Female, age 94, left hemisphere
400.4
2255
Female, age 91, right hemisphere
333.7
2256
Male, age 80, left hemisphere
267.9
2830
Female, age 67, right hemisphere
150.9
2516
Male, age 75, right hemisphere
121.8
AMYGDALA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
82.5
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 82.5
Samples: 152
Max nTPM: 258.7
Min nTPM: 1.0
Std nTPM: 54.6
Median nTPM: 78.5
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
258.7
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
234.9
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
232.5
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
221.9
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
200.1
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
198.9
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
186.6
GTEX-R55E-0011-R4A-SM-2TC5H
20-29 years, male
172.4
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
170.4
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
168.7
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
167.5
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
165.3
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
162.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
161.2
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
157.6
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
154.6
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
151.8
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
149.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
147.7
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
142.8
GTEX-P44G-0011-R4A-SM-2I3FB
30-39 years, male
141.4
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
140.5
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
140.2
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
134.2
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
133.2
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
132.7
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
131.7
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
131.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
130.5
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
130.4
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
130.4
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
127.4
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
121.1
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
120.9
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
119.9
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
119.4
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
118.5
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
117.7
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
115.2
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
114.5
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
114.3
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
114.1
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
113.5
GTEX-UTHO-0011-R4A-SM-3GIJP
60-69 years, male
112.8
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
112.7
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
111.8
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
111.3
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
111.0
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
109.9
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
109.6
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
109.6
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
103.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
103.4
GTEX-T6MN-0011-R4A-SM-32QPG
50-59 years, male
101.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
100.1
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
100.0
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
99.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
98.8
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
97.7
GTEX-QMR6-0011-R4A-SM-32PKU
50-59 years, male
95.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
92.2
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
92.1
GTEX-QDT8-0011-R4A-SM-32PKM
30-39 years, female
92.1
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
91.5
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
90.7
GTEX-P44H-0011-R4A-SM-2XCEW
40-49 years, male
89.8
GTEX-T5JC-0011-R4A-SM-32PLT
20-29 years, male
89.2
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
88.1
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
84.5
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
83.8
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
83.7
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
83.6
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
82.2
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
81.9
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
80.1
GTEX-NL3H-0011-R4a-SM-2I3GK
60-69 years, male
78.7
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
78.2
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
76.9
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
75.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
75.8
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
70.8
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
69.2
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
69.0
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
68.4
GTEX-N7MS-0011-R4a-SM-2HMKW
60-69 years, male
67.9
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
66.4
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
66.1
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
65.9
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
65.4
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
65.3
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
65.1
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
63.5
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
58.9
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
56.4
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
55.4
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
55.3
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
55.1
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
52.9
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
50.4
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
48.6
GTEX-18464-0011-R4a-SM-7LG6T
50-59 years, male
47.7
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
47.5
GTEX-Y8DK-0011-R4A-SM-EXUR1
60-69 years, male
46.1
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
43.9
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
43.2
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
42.4
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
40.9
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
40.9
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
40.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
39.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
37.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
37.1
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
37.0
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
36.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
33.7
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
32.5
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
31.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
31.3
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
30.8
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
30.3
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
29.4
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
29.3
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
28.8
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
28.5
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
28.1
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
27.8
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
26.0
GTEX-1JN6P-0011-R4a-SM-EZ6MS
60-69 years, male
25.8
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
25.4
GTEX-15DDE-0011-R4b-SM-7KULI
50-59 years, female
25.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
24.7
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
22.5
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
22.1
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
21.0
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
19.8
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
19.2
GTEX-183WM-0011-R4a-SM-7LG6S
70-79 years, female
18.7
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
17.0
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
13.7
GTEX-1JJEA-0011-R4a-SM-EXUTC
60-69 years, male
13.1
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
12.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
11.9
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
11.5
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
11.0
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
10.1
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
10.1
GTEX-ZE9C-0011-R4a-SM-4WKH6
60-69 years, male
9.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
6.9
GTEX-145MI-0011-R4b-SM-5PNZH
60-69 years, female
3.7
GTEX-1H2FU-0011-R4a-SM-CL551
60-69 years, female
3.7
GTEX-X4EP-0011-R4B-SM-3P627
60-69 years, female
2.6
GTEX-1CB4J-0011-R4b-SM-9WG5P
60-69 years, male
1.0
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
483.1
Mouse sample
Sample description
nTPM
Amygdala nTPM: 483.1
Samples: 4
Max nTPM: 519.1
Min nTPM: 446.3
Sample A
Male
519.1
Sample B
Male
446.3
Sample C
Female
494.2
Sample D
Female
472.7
AMYGDALA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
