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BRAIN HIPPOCAMPAL FORMATION Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
Hippocampal formation
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
Mouse brain, Intensity
Hippocampal formationi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

110.440
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:116.3 nTPM
HPA Brain:712.2 nTPM
GTEx:116.3 nTPM
FANTOM5:246.8 Scaled Tags Per Million
Pig:433.2 nTPM
Mouse:648.5 nTPM
Allen mouse:13.5 Expression energy

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA008394Antibody HPA064788
Glial cells Not detectedNot detected
Neuronal cells LowNot detected





HIPPOCAMPAL FORMATION - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

, antibody HPA008394
Hippocampal formation mean intensity 110.440
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

FRONT BACK
Polymorph layer of the dentate gyrus 60.422
Molecular layer of the dentate gyrus 69.246
Granular dentate gyrus 24.781
CA1 - oriens layer 70.019
CA1 - pyramidal layer 32.516
CA1 - radiatum layer 67.990
CA2 - oriens layer 84.615
CA2 - pyramidal layer 39.895
CA2 - radiatum layer 70.760
CA3 - oriens layer 64.716
CA3 - pyramidal layer 27.045
CA3 - radiatum layer 72.166
Stratum lucidum 71.357
Lacunosum moleculare 38.826
Subiculum 45.400

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

712.2
Sample id Sample description nTPM
Hippocampus
nTPM: 402.2
1898 Male, age 80, left hemisphere 536.8
2621 Female, age 67, right hemisphere 520.5
1911 Female, age 85, right hemisphere 403.9
1855 Male, age 76, left hemisphere 376.0
2148 Female, age 91, left hemisphere 370.0
2529 Female, age 94, left hemisphere 206.0
Dentate gyrus
nTPM: 427.2
1927 Female, age 91, both hemispheres 562.1
2246 Female, age 85, both hemispheres 463.2
2010 Male, age 76, both hemispheres 410.8
2530 Female, age 94, left hemisphere 409.8
2531 Female, age 67, both hemispheres 384.3
2528 Male, age 74, both hemispheres 332.8
Entorhinal gyrus
nTPM: 519.3
2613 Female, age 94, left hemisphere 673.0
1938 Female, age 85, left hemisphere 612.3
2686 Male, age 75, right hemisphere 554.8
2764 Male, age 80, right hemisphere 545.1
1787 Male, age 76, left hemisphere 449.9
2117 Female, age 91, right hemisphere 280.5
Hippocampus, CA1
nTPM: 547.0
2749 Male, age 80, left hemisphere 906.7
2527 Male, age 74, both hemispheres 625.9
1873 Female, age 85, both hemispheres 468.9
2082 Female, age 91, right hemisphere 419.2
2045 Male, age 76, both hemispheres 314.5
Hippocampus, CA2
nTPM: 458.7
2249 Male, age 74, both hemispheres 557.6
1892 Male, age 76, both hemispheres 545.9
1963 Male, age 80, left hemisphere 472.5
2113 Female, age 91, right hemisphere 404.9
2437 Female, age 94, left hemisphere 397.0
1940 Female, age 85, left hemisphere 374.1
Hippocampus, CA3
nTPM: 489.5
2137 Male, age 80, left hemisphere 719.0
2861 Female, age 67, both hemispheres 516.8
2436 Male, age 74, both hemispheres 496.9
2620 Female, age 94, left hemisphere 440.0
1867 Male, age 76, both hemispheres 413.0
1891 Female, age 85, both hemispheres 351.5
Parahippocampal cortex
nTPM: 605.6
2245 Female, age 91, both hemispheres 746.6
2693 Female, age 94, both hemispheres 741.2
2622 Female, age 67, right hemisphere 736.4
1850 Male, age 80, both hemispheres 714.3
1933 Female, age 85, both hemispheres 642.3
2250 Female, age 67, right hemisphere 594.2
1990 Female, age 91, right hemisphere 580.0
2532 Female, age 72, left hemisphere 547.9
2692 Male, age 74, both hemispheres 379.7
2018 Male, age 76, both hemispheres 373.0
Perirhinal gyrus
nTPM: 712.2
1847 Female, age 91, left hemisphere 804.2
1841 Female, age 85, right hemisphere 750.6
1794 Male, age 80, right hemisphere 731.2
2521 Female, age 94, right hemisphere 729.4
2848 Male, age 76, right hemisphere 545.5
Subiculum
nTPM: 382.3
1977 Female, age 85, both hemispheres 507.7
2438 Female, age 94, left hemisphere 480.3
1901 Male, age 80, both hemispheres 444.6
2619 Male, age 74, both hemispheres 350.3
2729 Female, age 91, right hemisphere 261.3
2042 Male, age 76, both hemispheres 249.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

116.3
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 116.3
Samples: 197

Max nTPM: 367.0
Min nTPM: 0.9
Std nTPM: 89.9
Median nTPM: 95.9
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 367.0
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 334.3
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 331.2
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 309.8
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 308.2
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 304.4
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 302.7
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 297.3
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 295.8
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 289.5
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 289.1
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 272.3
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 271.5
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 270.8
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 264.4
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 260.8
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 260.0
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 259.5
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 255.4
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 253.6
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 246.7
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 246.1
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 245.9
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 242.9
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 240.1
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 239.0
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 238.8
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 231.4
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 229.5
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 228.4
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 227.4
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 227.1
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 225.7
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 224.6
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 219.2
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 217.5
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 215.6
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 215.6
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 214.9
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 207.0
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 206.2
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 202.7
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 195.6
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 194.3
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 193.0
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 190.2
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 188.6
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 188.4
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 187.3
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 186.0
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 184.9
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 182.7
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 177.6
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 174.7
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 171.3
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 165.4
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 164.9
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 163.0
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 160.8
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 159.6
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 150.6
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 150.1
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 149.4
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 148.7
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 148.1
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 147.6
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 141.6
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 141.5
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 141.3
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 137.5
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 135.8
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 135.4
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 133.5
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 131.2
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 130.1
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 123.4
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 122.5
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 121.4
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 120.2
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 120.1
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 119.6
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 118.3
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 117.9
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 110.2
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 110.0
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 109.9
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 108.3
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 107.9
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 107.1
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 105.5
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 102.8
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 102.4
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 102.4
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 102.3
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 100.6
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 99.0
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 98.3
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 97.9
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 95.9
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 94.7
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 93.9
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 92.2
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 91.1
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 89.9
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 89.2
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 88.2
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 86.9
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 84.0
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 83.2
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 83.0
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 82.3
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 80.7
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 79.8
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 79.6
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 79.3
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 79.0
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 78.4
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 78.1
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 74.7
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 74.6
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 72.9
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 68.6
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 66.7
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 65.6
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 63.1
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 62.6
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 61.3
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 60.4
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 59.9
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 59.5
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 58.2
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 57.7
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 53.4
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 49.8
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 49.7
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 48.8
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 48.1
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 47.0
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 46.0
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 45.8
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 45.4
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 44.3
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 43.9
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 42.5
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 42.0
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 41.9
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 41.3
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 40.4
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 39.7
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 39.1
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 38.3
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 36.1
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 34.9
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 34.8
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 32.1
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 31.6
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 31.6
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 30.9
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 29.4
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 29.4
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 28.9
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 26.7
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 24.7
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 24.5
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 24.2
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 22.7
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 22.1
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 22.1
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 21.8
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 19.7
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 19.4
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 18.4
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 18.3
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 16.4
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 16.4
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 15.7
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 15.2
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 14.6
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 13.1
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 11.8
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 11.0
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 10.2
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 8.9
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 8.6
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 7.6
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 7.0
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 6.6
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 6.3
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 4.7
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 4.5
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 3.5
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 3.4
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 3.4
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 3.2
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 3.0
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 1.5
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 0.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

246.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 246.8
FF:10169-103B7 60 years, female 313.6
FF:10153-102I9 76 years, female 180.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

433.2
Pig sample Sample description nTPM
Subiculum
nTPM: 379.4
Samples: 4

Max nTPM: 439.4
Min nTPM: 332.3
Sample A Female 439.4
Sample B Female 332.3
Sample C Male 410.9
Sample D Male 335.1
Dorsal hippocampus
nTPM: 419.7
Samples: 4

Max nTPM: 516.5
Min nTPM: 267.0
Sample A Female 516.5
Sample B Female 472.6
Sample C Male 422.5
Sample D Male 267.0
Entorhinal cortex
nTPM: 396.0
Samples: 4

Max nTPM: 401.1
Min nTPM: 393.1
Sample A Female 393.6
Sample B Female 393.1
Sample C Male 396.1
Sample D Male 401.1
Ventral hippocampus
nTPM: 433.2
Samples: 4

Max nTPM: 561.5
Min nTPM: 279.8
Sample A Female 561.5
Sample B Female 279.8
Sample C Male 515.3
Sample D Male 376.1

HIPPOCAMPAL FORMATION - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

648.5
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 648.5
Samples: 4

Max nTPM: 787.4
Min nTPM: 516.4
Sample A Male 632.3
Sample B Male 657.8
Sample C Female 516.4
Sample D Female 787.4
Hippocampal formation
nTPM: 546.2
Samples: 4

Max nTPM: 653.7
Min nTPM: 461.0
Sample A Male 469.6
Sample B Male 600.6
Sample C Female 653.7
Sample D Female 461.0

HIPPOCAMPAL FORMATION - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

13.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 13.5
1015 Antisense, RP_Baylor_103052, Mouse strain C57BL/6J (56 days, male) 26.8
1014 Antisense, RP_Baylor_103052, Mouse strain C57BL/6J (56 days, male) 23.7
1016 Sense, RPS_Baylor_37049, Mouse strain C57BL/6J (56 days, male) 0.3

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