PONS AND MEDULLA - Expression summary
Mouse brain, Intensity
Medulla oblongatai 		60.294
Mouse brain, Intensity
Ponsi 		78.518
RNA expressioni
HPA Brain:311.3 nTPM
FANTOM5:307.6 Scaled Tags Per Million
Pig:250.3 nTPM
Mouse:83.3 nTPM
Allen mouse:5.7 Expression energy

MEDULLA OBLONGATA - Mouse brain profilei , antibody HPA008394
Medulla oblongata mean intensity 60.294
intensityi
FRONT BACK
Nucleus of the solitary tract -
Raphe magnus nucleus 20.863
Cochlear nucleus 17.711
Lateral paragigantocellular nucleus 56.733
Raphe pallidus nucleus 40.649
Facial nucleus 23.682
Hypoglossal nucleus -
Ambiguus nucleus -
External cuneate nucleus -
Inferior olivary nucleus -
Raphe obscures nucleus -
Dorsal motor nucleus of vagus -
Barrington's nucleus -
Koelliker-fuse nucleus -
Motor tregiminal nucleus 16.142
Parabrachial nucleus 9.652
Principle sensory trigeminal nucleus 18.600
Locus coeruleus 61.635
Pontine nucleus 17.113
Vestibular nucleus 13.116
Pontine reticular nucleus, oral 18.918
Lateral lemniscus 11.742
Superior paraolivary nucleus 20.172

PONS AND MEDULLA - HPA Brain RNA-seq
Max subtype nTPMi 311.3
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 124.5
2301 Female, age 85, both hemispheres 163.5
1984 Male, age 76, both hemispheres 139.8
2188 Female, age 91, both hemispheres 127.2
2090 Male, age 80, both hemispheres 67.4
Area postrema
nTPM: 29.9
2054 Male, age 76, both hemispheres 68.7
2799 Male, age 61, both hemispheres 11.4
2306 Male, age 80, both hemispheres 9.8
Dorsal cochlear nucleus
nTPM: 66.4
2187 Female, age 91, both hemispheres 100.7
2058 Male, age 76, both hemispheres 86.6
2370 Male, age 61, both hemispheres 70.0
2378 Male, age 80, both hemispheres 44.0
2802 Male, age 74, right hemisphere 30.8
Dorsal medullary reticular nucleus
nTPM: 84.5
2040 Female, age 85, both hemispheres 111.3
2373 Male, age 61, both hemispheres 79.7
2088 Male, age 76, both hemispheres 62.5
Dorsal motor vagal complex
nTPM: 81.4
2133 Female, age 91, both hemispheres 137.8
2813 Female, age 72, unknown 95.5
2000 Male, age 74, unknown 88.9
2844 Male, age 55, unknown 88.4
2807 Female, age 85, both hemispheres 87.5
2643 Male, age 74, both hemispheres 56.3
2797 Male, age 61, both hemispheres 56.1
2185 Male, age 76, both hemispheres 40.7
Dorsal tegmental nucleus
nTPM: 86.4
1936 Male, age 76, left hemisphere 105.4
2358 Male, age 61, both hemispheres 88.1
2083 Male, age 80, both hemispheres 83.1
2326 Male, age 74, both hemispheres 68.8
Dorsolateral tegmental area
nTPM: 100.2
2141 Male, age 76, both hemispheres 158.0
2751 Female, age 85, both hemispheres 150.8
2654 Male, age 80, both hemispheres 80.3
2360 Male, age 74, both hemispheres 74.7
2337 Male, age 61, both hemispheres 37.4
Gigantocellular reticular nuclei, medullary
nTPM: 142.8
2462 Male, age 74, both hemispheres 316.8
2310 Male, age 80, both hemispheres 173.6
2387 Female, age 91, both hemispheres 124.3
1876 Female, age 85, both hemispheres 101.1
2314 Male, age 61, both hemispheres 79.2
2022 Male, age 76, right hemisphere 61.5
Gigantocellular reticular nuclei, pars
nTPM: 171.5
2168 Male, age 76, both hemispheres 311.5
2330 Male, age 80, both hemispheres 164.8
2706 Male, age 80, both hemispheres 144.0
2336 Male, age 61, both hemispheres 134.2
2084 Female, age 85, both hemispheres 103.1
Inferior olive
nTPM: 82.9
2085 Female, age 85, both hemispheres 167.4
2628 Female, age 91, both hemispheres 102.1
2379 Male, age 80, both hemispheres 60.2
2178 Male, age 61, both hemispheres 46.5
2563 Male, age 74, both hemispheres 38.1
Kolliker-Fuse nucleus
nTPM: 106.8
2793 Female, age 91, left hemisphere 143.4
2315 Male, age 76, right hemisphere 100.8
2163 Male, age 80, both hemispheres 76.1
Lateral lemniscal nuclei
nTPM: 245.5
2453 Male, age 74, right hemisphere 301.7
2169 Male, age 76, both hemispheres 298.3
2036 Male, age 80, both hemispheres 250.2
2746 Female, age 85, left hemisphere 193.8
2320 Female, age 91, left hemisphere 183.6
Lateral medullary reticular nucleus
nTPM: 107.3
2044 Male, age 76, both hemispheres 193.5
2804 Female, age 91, both hemispheres 117.0
2190 Female, age 85, both hemispheres 113.4
2374 Male, age 61, both hemispheres 108.1
2305 Male, age 74, both hemispheres 80.2
2852 Male, age 80, both hemispheres 31.5
Lateral parabrachial nucleus
nTPM: 136.1
2139 Female, age 85, right hemisphere 246.3
2013 Male, age 80, both hemispheres 129.3
2790 Male, age 61, both hemispheres 116.5
2792 Male, age 76, both hemispheres 52.4
Lateral vestibular nucleus
nTPM: 71.6
2184 Male, age 76, both hemispheres 73.8
2311 Male, age 80, both hemispheres 69.3
Locus coeruleus
nTPM: 281.5
2720 Male, age 74, both hemispheres 465.7
2123 Female, age 91, both hemispheres 344.1
2014 Male, age 55, unknown 297.0
2788 Male, age 74, unknown 251.8
2317 Female, age 72, unknown 229.5
2162 Male, age 80, both hemispheres 203.1
1980 Male, age 76, both hemispheres 179.2
Medial olivary nucleus
nTPM: 43.2
2851 Male, age 80, both hemispheres 73.0
1962 Male, age 76, both hemispheres 57.6
2138 Female, age 91, both hemispheres 31.0
1943 Male, age 61, both hemispheres 11.3
Medial parabrachial nucleus
nTPM: 114.4
2854 Male, age 80, both hemispheres 155.6
2463 Female, age 85, right hemisphere 144.6
2156 Male, age 61, both hemispheres 102.6
2786 Male, age 76, both hemispheres 87.6
2170 Female, age 91, both hemispheres 81.6
Medial periolivary nuclei
nTPM: 220.7
2171 Female, age 85, both hemispheres 325.6
2063 Male, age 76, both hemispheres 323.9
2791 Male, age 74, right hemisphere 177.7
2458 Female, age 91, both hemispheres 151.0
2081 Male, age 80, both hemispheres 125.3
Medial vestibular nucleus
nTPM: 107.9
2743 Female, age 85, both hemispheres 197.7
2801 Male, age 74, both hemispheres 115.8
2134 Male, age 76, both hemispheres 109.7
2803 Female, age 91, both hemispheres 88.1
2624 Male, age 61, both hemispheres 70.3
2093 Male, age 80, both hemispheres 65.5
Motor facial nucleus
nTPM: 235.4
2062 Male, age 76, both hemispheres 337.6
2327 Male, age 80, both hemispheres 334.0
2697 Female, age 85, both hemispheres 249.4
2365 Male, age 74, right hemisphere 244.3
2795 Female, age 91, both hemispheres 154.0
2126 Male, age 61, both hemispheres 93.0
Motor hypoglossal nucleus
nTPM: 97.5
2125 Female, age 91, both hemispheres 107.7
2461 Male, age 61, both hemispheres 106.9
2132 Female, age 85, both hemispheres 98.2
2277 Male, age 76, both hemispheres 96.6
2182 Male, age 80, both hemispheres 78.0
Motor trigeminal nucleus
nTPM: 144.6
2079 Male, age 80, both hemispheres 219.3
2321 Female, age 91, both hemispheres 151.8
2560 Male, age 74, both hemispheres 144.7
2335 Male, age 61, both hemispheres 112.9
2309 Male, age 76, both hemispheres 94.2
Nuclei of the trapezoid body
nTPM: 290.9
2159 Male, age 61, both hemispheres 397.7
2735 Female, age 85, both hemispheres 358.2
1983 Male, age 76, both hemispheres 291.1
2166 Male, age 80, both hemispheres 219.3
2368 Female, age 91, both hemispheres 188.2
Nucleus ambiguus
nTPM: 82.2
2096 Female, age 85, both hemispheres 113.4
2071 Male, age 76, both hemispheres 51.0
Nucleus cuneatus
nTPM: 51.5
2131 Male, age 76, both hemispheres 92.5
2376 Male, age 61, both hemispheres 83.1
2562 Male, age 61, both hemispheres 77.9
2564 Male, age 74, both hemispheres 48.6
2381 Male, age 80, both hemispheres 48.1
2808 Female, age 85, both hemispheres 37.8
2100 Male, age 76, both hemispheres 31.0
2805 Female, age 91, both hemispheres 29.0
2380 Male, age 80, both hemispheres 15.8
Nucleus gracilis
nTPM: 27.8
2627 Male, age 74, both hemispheres 39.1
2382 Male, age 80, both hemispheres 22.6
2299 Female, age 85, both hemispheres 21.8
Nucleus raphe magnus
nTPM: 311.3
2172 Female, age 85, both hemispheres 412.5
2455 Male, age 74, both hemispheres 402.4
2160 Male, age 61, both hemispheres 376.8
2328 Male, age 80, both hemispheres 263.5
2459 Female, age 91, both hemispheres 215.9
2051 Male, age 76, both hemispheres 196.8
Nucleus raphe obscurus
nTPM: 98.6
2800 Male, age 61, midline 150.4
2845 Female, age 85, midline 127.9
2142 Male, age 76, midline 17.5
Nucleus raphe pallidus
nTPM: 104.6
2183 Male, age 80, midline 151.8
1924 Male, age 61, midline 97.7
2145 Male, age 76, midline 64.5
Nucleus tractus solitarii
nTPM: 105.4
2144 Female, age 91, right hemisphere 143.9
2656 Male, age 76, both hemispheres 113.5
2307 Male, age 80, both hemispheres 93.2
2191 Female, age 85, both hemispheres 70.9
Paramedian reticular nucleus
nTPM: 144.8
2050 Female, age 85, both hemispheres 273.3
2313 Male, age 61, both hemispheres 132.7
2052 Male, age 76, both hemispheres 90.9
2057 Male, age 80, both hemispheres 82.3
Parvicellular reticular nuclei
nTPM: 133.3
2558 Male, age 74, both hemispheres 194.4
2095 Male, age 76, both hemispheres 134.8
2119 Male, age 80, both hemispheres 70.8
Parvicellular reticular nuclei, medullary
nTPM: 100.0
2189 Female, age 91, both hemispheres 118.7
2181 Male, age 80, left hemisphere 102.0
2091 Female, age 85, both hemispheres 79.3
Pedunculopontine tegmental nucleus
nTPM: 126.2
2334 Male, age 80, both hemispheres 133.0
1921 Female, age 85, both hemispheres 132.4
2338 Male, age 61, both hemispheres 113.2
Peritrigeminal nucleus
nTPM: 145.8
2179 Male, age 61, both hemispheres 172.8
2136 Male, age 76, both hemispheres 152.9
2067 Female, age 85, both hemispheres 111.8
Pontine nuclei
nTPM: 246.2
2109 Female, age 72, unknown 328.6
2727 Male, age 61, right hemisphere 321.9
1863 Male, age 55, unknown 289.2
2787 Female, age 85, both hemispheres 277.0
1968 Male, age 76, left hemisphere 247.6
2454 Male, age 74, left hemisphere 233.5
2115 Male, age 80, left hemisphere 141.0
2319 Female, age 91, both hemispheres 130.8
Pontine raphe nucleus
nTPM: 269.3
2122 Female, age 85, midline 285.2
2853 Male, age 76, midline 253.5
Posteroventral cochlear nucleus
nTPM: 70.4
2752 Female, age 85, both hemispheres 156.0
2070 Male, age 76, both hemispheres 109.2
2371 Male, age 61, both hemispheres 55.8
2341 Male, age 80, both hemispheres 16.4
2135 Female, age 91, both hemispheres 14.8
Prepositus hypoglossal nucleus
nTPM: 95.7
2855 Female, age 85, right hemisphere 104.7
2086 Male, age 80, both hemispheres 86.7
Principal sensory trigeminal nucleus
nTPM: 203.2
2158 Male, age 61, both hemispheres 338.9
2008 Male, age 80, left hemisphere 256.2
2367 Female, age 91, left hemisphere 152.8
2324 Male, age 76, both hemispheres 64.7
Reticular pontine nucleus, caudal
nTPM: 184.6
2332 Male, age 80, right hemisphere 296.8
2092 Male, age 76, both hemispheres 212.1
2457 Female, age 91, both hemispheres 167.9
2559 Male, age 74, both hemispheres 61.6
Reticular pontine nucleus, oral
nTPM: 196.7
2361 Male, age 74, both hemispheres 271.0
2012 Female, age 85, both hemispheres 239.9
2167 Male, age 76, both hemispheres 187.3
1939 Male, age 80, both hemispheres 143.0
2366 Female, age 91, both hemispheres 142.5
Reticulotegmental nucleus
nTPM: 167.1
2325 Male, age 76, both hemispheres 234.3
2333 Male, age 80, both hemispheres 171.0
2322 Female, age 91, both hemispheres 148.5
2452 Male, age 74, both hemispheres 114.6
Spinal trigeminal nucleus, caudal
nTPM: 91.1
2642 Male, age 74, both hemispheres 106.3
2312 Male, age 61, both hemispheres 101.9
2390 Female, age 91, both hemispheres 87.2
2308 Male, age 80, both hemispheres 80.9
2447 Male, age 76, both hemispheres 79.1
Spinal trigeminal nucleus, interpolar
nTPM: 162.9
2066 Male, age 76, right hemisphere 305.5
2389 Female, age 91, both hemispheres 227.1
2386 Female, age 85, both hemispheres 121.7
2033 Male, age 80, both hemispheres 94.8
2625 Male, age 61, both hemispheres 65.5
Spinal trigeminal nucleus, oral
nTPM: 109.8
1978 Male, age 76, both hemispheres 142.7
2737 Female, age 85, both hemispheres 125.0
2164 Male, age 80, both hemispheres 61.8
Spinal vestibular nucleus
nTPM: 68.3
2806 Female, age 85, both hemispheres 85.9
2186 Female, age 91, both hemispheres 78.9
2780 Male, age 80, both hemispheres 72.4
2748 Male, age 76, both hemispheres 67.9
2796 Male, age 61, both hemispheres 64.4
2384 Male, age 74, both hemispheres 40.2
Subcoeruleus area
nTPM: 154.6
2089 Male, age 76, left hemisphere 198.8
1958 Male, age 80, both hemispheres 176.9
2323 Female, age 91, left hemisphere 168.9
2369 Female, age 85, left hemisphere 142.2
2451 Male, age 74, both hemispheres 86.2
Superior olive
nTPM: 231.1
1875 Female, age 85, both hemispheres 320.1
2329 Male, age 80, right hemisphere 235.0
2020 Male, age 76, both hemispheres 214.2
2364 Male, age 74, right hemisphere 205.1
2561 Female, age 91, both hemispheres 181.1
Superior vestibular nucleus
nTPM: 68.5
2061 Male, age 76, both hemispheres 74.0
2015 Male, age 80, both hemispheres 68.2
2383 Male, age 74, both hemispheres 63.4
Ventral medullary reticular nucleus
nTPM: 100.0
2372 Male, age 61, both hemispheres 111.6
2060 Male, age 76, both hemispheres 88.5
Ventral periolivary nuclei
nTPM: 282.8
2130 Female, age 85, both hemispheres 373.3
2165 Male, age 80, both hemispheres 292.5
2794 Female, age 91, left hemisphere 255.3
2023 Male, age 76, both hemispheres 210.1
Ventrolateral medulla, A1-C1 cell groups
nTPM: 141.0
1986 Male, age 76, both hemispheres 179.1
2741 Female, age 85, both hemispheres 172.2
2302 Female, age 91, both hemispheres 147.7
2180 Male, age 61, both hemispheres 113.6
2118 Male, age 80, both hemispheres 92.1
Ventrolateral tegmental area, A5 NE cell group
nTPM: 181.5
2449 Male, age 74, both hemispheres 306.1
1959 Male, age 76, both hemispheres 230.6
2161 Male, age 80, both hemispheres 189.4
2456 Female, age 91, both hemispheres 123.9
2359 Male, age 61, both hemispheres 122.4
2840 Female, age 85, both hemispheres 116.5

PONS AND MEDULLA - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 307.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 61.0
FF:10165-103B3 76 years, female 62.0
FF:10182-103D2 60 years, female 60.1
Medulla oblongata
Scaled Tags Per Million: 39.1
FF:10038-101F2 18-64 years, mixed 53.2
FF:10155-103A2 76 years, female 39.9
FF:10174-103C3 60 years, female 24.4
Pons
Scaled Tags Per Million: 307.6
FF:10033-101E6 18-54 years, mixed 307.6

PONS AND MEDULLA - Pig RNA-seqi
Max subtype nTPMi 250.3
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 67.2
Samples: 4

Max nTPM: 85.9
Min nTPM: 47.6
Sample A Female 83.2
Sample B Female 52.2
Sample C Male 47.6
Sample D Male 85.9
Pons
nTPM: 250.3
Samples: 4

Max nTPM: 452.1
Min nTPM: 174.1
Sample A Female 452.1
Sample B Female 190.9
Sample C Male 174.1
Sample D Male 184.2

PONS AND MEDULLA - Mouse RNA-seqi
Max subtype nTPMi 83.3
Mouse sample Sample description nTPM
Pons and medulla
nTPM: 83.3
Samples: 4

Max nTPM: 90.2
Min nTPM: 74.2
Sample A Male 90.2
Sample B Male 82.1
Sample C Female 86.6
Sample D Female 74.2

PONS AND MEDULLA - Allen Mouse ISHi
Max subtype Expression energyi 5.7
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 5.6
1014 Antisense, RP_Baylor_103052, Mouse strain C57BL/6J (56 days, male) 11.1
1015 Antisense, RP_Baylor_103052, Mouse strain C57BL/6J (56 days, male) 8.0
1016 Sense, RPS_Baylor_37049, Mouse strain C57BL/6J (56 days, male) 0.0
Pons
Expression energy: 5.7
1014 Antisense, RP_Baylor_103052, Mouse strain C57BL/6J (56 days, male) 11.3
1015 Antisense, RP_Baylor_103052, Mouse strain C57BL/6J (56 days, male) 11.1
1016 Sense, RPS_Baylor_37049, Mouse strain C57BL/6J (56 days, male) 0.1

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